PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG287700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 272aa MW: 29564.7 Da PI: 8.1636 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.1 | 3.1e-08 | 140 | 178 | 12 | 55 |
HHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 RR+ri +++ eL +l+P K++ ae+Le+A ++Ik Lq Pavir.3KG287700.1.p 140 RRKRISEKMVELSRLIPDgH------KMNTAEMLEEAARHIKLLQ 178 9****************955......****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.664 | 128 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-7 | 136 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.28E-8 | 140 | 181 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.4E-8 | 140 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-5 | 140 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.46E-10 | 140 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MFSCEESRFG GRRREIEARG DDGAGARAPL GPGRKEEEER IDEWVTDALL GFVYAPTNAA 60 LDNLLNLPPH DDGGAFHKPI HGDSNGKVER HCAKRQRACG DGAALRTSAP ASKAIAEAIS 120 GAHRGHEEGH GQCVPVRAER RKRISEKMVE LSRLIPDGHK MNTAEMLEEA ARHIKLLQVQ 180 VGVLALMRTD ENEKMPSMVQ EQMHTLLVRG SVQERLAAEG KCMVPRKLVG AVASDSSVKS 240 NALVSRDLGW FVGGSVGRIW RLLVAACSYS F* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG287700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243243 | 3e-55 | AC243243.1 Panicum virgatum clone PV_ABa051-K10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002465928.1 | 3e-56 | uncharacterized protein LOC8061437 | ||||
TrEMBL | A0A2T7CI40 | 7e-84 | A0A2T7CI40_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J05526.1.p | 1e-88 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6201 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34820.1 | 1e-19 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG287700.1.p |