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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.3KG209200.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
NAC |
Protein Properties |
Length: 550aa MW: 60873.2 Da PI: 5.8562 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.3KG209200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 81.2 | 2.2e-25 | 25 | 160 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyat.gkrknratk....sgyWka 85
ppG++F Pt+ elv+ yL++++eg++l+l +v++e+ +++++P +L + +e++wyfF+ r+ ++++ ++nr+++ +++Wka
Pavir.3KG209200.1.p 25 PPGYHFVPTEAELVDVYLRARIEGRELPL-DVVNEIAVLDWQPGSLVeAYRGYGENKWYFFTAREPSSSNkAGEPNRKVRvpgvKATWKA 113
9****************************.99**************8334444889********99888625577776555566899*** PP
NAM 86 tgkdkevlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
tg+ ++ ++ ++ +vg+k++L++ + +a++ +W mhey l
Pavir.3KG209200.1.p 114 TGSLVPISVQggerqqkEKVVVGTKRVLIYQSSDAED---GKWSMHEYIL 160
********9976655444444*********9666666...69******87 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 550 aa
Download sequence Send
to blast |
MGGTVTARPR PRPQPHELVR QLQFPPGYHF VPTEAELVDV YLRARIEGRE LPLDVVNEIA 60 VLDWQPGSLV EAYRGYGENK WYFFTAREPS SSNKAGEPNR KVRVPGVKAT WKATGSLVPI 120 SVQGGERQQK EKVVVGTKRV LIYQSSDAED GKWSMHEYIL KGHAKIGQYA LCSIQRKQHS 180 DTVDDNAVER SRKDNAVEGS SSSSRKRTRA RKKVDPEKTK KKRTTNKAAS TKKTASRRKN 240 NKTSAPAQEG QHQQEEGAPV SPVKPPCTPP QHQQAPPQAL QQGQKALAVY GVPVLTAPPL 300 QGYPPHPAGM LGDYAPMHEQ DTRAGSFQCD DDMSQCLEIQ NLLMRSCNRE EQLPCYASNE 360 INADSNSQYQ LYQHQDDCEL FALEDQQMYT AQYLCQGSDL FPSDTTQNHD GQHQIYQQEV 420 GGAFGTPDQH TIAQYYDQLP YELMSSSYLP AQGGYYYCSS DQFIASVQGD AAASGSDGDM 480 GLAAADEFDA MRMLRDDDPD EDCVGSQDGS SPEALQSQDP GSRGQQQHSA HGHVCEGPPS 540 RSISDFWTW*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 1e-17 | 19 | 180 | 12 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-17 | 19 | 180 | 12 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-17 | 19 | 180 | 12 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-17 | 19 | 180 | 12 | 168 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-17 | 19 | 180 | 12 | 168 | NAC domain-containing protein 19 |
4dul_B | 1e-17 | 19 | 180 | 12 | 168 | NAC domain-containing protein 19 |
Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 204 | 222 | RKRTRARKKVDPEKTKKKR |