PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG188900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 498aa    MW: 55307.1 Da    PI: 9.4954
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG188900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.85.3e-331252711128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.. 77 
                          lp+G++F+P+d+el+ e+L+  ve+        +   +    +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r   
  Pavir.3KG188900.1.p 125 LPAGVKFDPSDQELI-EHLESLVEEGGsrahplI---NdfipTIQGDdGICYTHPENLP-GVTRNGLSKHFFHRPSKAYTTGTRKRRRiq 209
                          799************.99*****99985665442...133333655546**********.455556789******************768 PP

                  NAM  78 ..........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                    + +++W++tgk+++v++ +g+++g+kk+Lv+y   g++ k++kt+Wvmh+y+l
  Pavir.3KG188900.1.p 210 sehgshgsedVGEARWHKTGKTRPVIV-GGRQKGCKKILVLYssYGKQGKPKKTNWVMHQYHL 271
                          999999988877999************.99************6558999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-35120289IPR003441NAC domain
PROSITE profilePS5100532.056125289IPR003441NAC domain
PfamPF023654.9E-14126271IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MAYGANLTRC LQPLQLAWVA RKRRHKTRTR SFPFIPFFFF HLLALSAWWV PVLQPPPGSR  60
GGDPRAASRE RGNHRRAMGH SGSMISSCGT SELTDEKNKD SQTSASRHCP SCGHSLDCNP  120
DMIGLPAGVK FDPSDQELIE HLESLVEEGG SRAHPLINDF IPTIQGDDGI CYTHPENLPG  180
VTRNGLSKHF FHRPSKAYTT GTRKRRRIQS EHGSHGSEDV GEARWHKTGK TRPVIVGGRQ  240
KGCKKILVLY SSYGKQGKPK KTNWVMHQYH LGDQEEKDGE LVVSKVFYQT QLRSTTVTVE  300
HHTRDGDEKV AETSKAMQNV LPGFVADTTA VTIAMVPQQQ QQQKRQRQPD GQCSFAPAKM  360
SHEVGVVGGQ VADDQGEKRD NHHIPSQHNV LSDLHAKPVP TMSFHVGTPL NTVSTAISPQ  420
ARDRSVVLDS RFCYPAILHR NERNQEQQQK VGRRSAEMEG LIIACQSASS TEAGASPERP  480
YQHNWPPDQP RSTSITM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-1212327113140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202206RKRRR
2203207KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG188900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808650.10.0NAC domain-containing protein 10-like isoform X2
TrEMBLA0A2S3H8Q70.0A0A2S3H8Q7_9POAL; Uncharacterized protein
STRINGPavir.J36494.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.13e-98NAC domain containing protein 75