PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG036400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 890aa MW: 96613.1 Da PI: 7.0849 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.2 | 0.00069 | 695 | 732 | 13 | 55 |
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+ a K s + Lek+++++ Lq Pavir.3KG036400.1.p 695 RQLIQDRIKELRELVPNgA------KCSIDALLEKTIKHMLFLQ 732 67799************66......999999********99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.2E-28 | 6 | 154 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 10.804 | 682 | 731 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.8E-4 | 695 | 740 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010078 | Biological Process | maintenance of root meristem identity | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010479 | Biological Process | stele development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 890 aa Download sequence Send to blast |
MAVGDALRRL CEEVGWSYAV FWKAIGAADP VHLVWEDGFC GHASCSAGSE APDAGCEPGS 60 SVCTLVRKIM ASQIHVVGEG TIGRAAFTGN HQWIIHDPAN DHSLRSEVSA EINHQFVAGI 120 RTIAIIPVLP RGVLQLGSTN VVVEDTNLVL QYKKLCSQLN NRSSMASSSS VKNELNQKVQ 180 SRPLNAPPSM YSADVRSKLF GGSPVTYQQC YGLDATTVSS SMLANTGSNA SLLMVAQRNG 240 QAVKEHIIYA PDTRFRPQNP YCDRRVESDT QSSAVSSDFI SSISTSMGKH PLLMTNSRQL 300 EQGNMGEQSD PRNFLLKSLA YRSPLVHENT NMILLHGRSQ LSDFVNSHGG FGFLPEGCRV 360 VKGNLYASTA NQNLEQRCNS TSGIAGHKAA ISYKMPQSAQ VVMKMECPKG ETFQASAAVS 420 SGSNLSSSLK TAISQEKHIS SSDLGGPKKA NEVHDPADAI VQAVKNMDRR KLPDISNEKV 480 PSLLMDPIAE SDLFDMFGSE FHHLCRNVDN DLTRKAAKPE SSNRGAPESS VHVDTSPAFD 540 SVDGEFPYSG IFSLTDTDQL LDAVISNVNP GGKQISGDSA SCKTSVTDIP SSSYCRSKDP 600 KHCESSGAPS SLIKNEFTVS NLVKQPSFLE KEEDGCLSQN NGIHKSQIRL WIESGQNMKC 660 ESASASSSKG VDTSSKASRK RSRPGENPKP RPKDRQLIQD RIKELRELVP NGAKCSIDAL 720 LEKTIKHMLF LQSVTKHADN LKDSNESKIL GGENGPLKDY FEGGATWAFD VGSQSMTCPI 780 IVEDLERPRQ MLVEMLCEDR GIFLEIADFI KGLGLTILRG VMEARKNKIW ARFTVEANRD 840 VTRMEIFLSL MRLLEPSCDG GGAGENPNNV KMPLGVVQYP VIPATGHLR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.34421 | 0.0 | callus| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG036400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808394.1 | 0.0 | transcription factor LHW-like | ||||
TrEMBL | A0A2T7E5C6 | 0.0 | A0A2T7E5C6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca00201.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2654 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31280.1 | 6e-51 | conserved peptide upstream open reading frame 7 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG036400.1.p |