PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3KG030600.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 308aa MW: 34223.4 Da PI: 8.8665 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.4 | 4.7e-11 | 83 | 111 | 6 | 34 |
HHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeek 34 rr+++NReAAr+sR+RKka+i++Le Pavir.3KG030600.4.p 83 IIRRLAQNREAARKSRLRKKAYIQQLESS 111 579***********************974 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.6E-6 | 78 | 160 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.4E-8 | 78 | 123 | No hit | No description |
PROSITE profile | PS50217 | 8.829 | 80 | 124 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.3E-8 | 82 | 115 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.94E-7 | 84 | 125 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 85 | 100 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 8.3E-29 | 162 | 233 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MVQQEHRFAT APLFAFAEGS NLTADSTDDS ESSSRNNSNH SDQHGVAANM ASQFDQVSQQ 60 QIQHKNMSTS STPKTGKTLD PKIIRRLAQN REAARKSRLR KKAYIQQLES SKLKLAQMEQ 120 DMQRARSQGL FLGGAPGANT SSGAGMFDVE YARWLDENGR RMAELHGALH AHLPDGDLRA 180 IVDDTLTHHD ELFQLKAVAA KSDVFHLITG VWTTPAERCF LWMGGFRPSD LLKADNLRQQ 240 TLHQMHRILT VRQAARCFLA IGEYHNRLRA LSSLWASRPR EILVADEGNC GEISIAAQPS 300 QSQFSAF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.5607 | 3e-74 | callus| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3KG030600.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF111321 | 0.0 | KF111321.1 Zea mays cultivar B73 basic leucine zipper transcription factor mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809311.1 | 1e-128 | transcription factor TGAL4-like isoform X2 | ||||
Swissprot | Q53Q70 | 1e-107 | TGAL4_ORYSJ; Transcription factor TGAL4 | ||||
TrEMBL | A0A0E0BFF0 | 1e-141 | A0A0E0BFF0_9ORYZ; Uncharacterized protein | ||||
STRING | Pavir.Ca00148.1.p | 1e-152 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.2 | 1e-79 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3KG030600.4.p |
Publications ? help Back to Top | |||
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