PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.3KG006400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 169aa MW: 18746.4 Da PI: 10.3131 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 36 | 1.5e-11 | 16 | 45 | 5 | 34 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeek 34 k rr+++NReAAr+sR+RKka+i++Le Pavir.3KG006400.1.p 16 KTIRRLAQNREAARKSRLRKKAYIQQLESS 45 6789***********************974 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.2E-8 | 11 | 57 | No hit | No description |
SMART | SM00338 | 8.0E-7 | 12 | 94 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.956 | 14 | 58 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.7E-8 | 16 | 51 | No hit | No description |
Pfam | PF00170 | 9.4E-9 | 16 | 50 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 2.65E-22 | 16 | 68 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 19 | 34 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 2.4E-29 | 96 | 168 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 169 aa Download sequence Send to blast |
MSTSSTPKTG KTLDPKTIRR LAQNREAARK SRLRKKAYIQ QLESSKLKLA QMEQDMQRAR 60 SQGLFLGGAP GANTSSGAGM FDVEYARWLD ENGRRMAELH GALHAHLPDG DLRAIVDDTL 120 THHDELFQLK AVAAKSDVFH IITGVWTTPA ERCFLWMGGF RPSDLLKV* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.5607 | 2e-37 | callus| root |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.3KG006400.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF111321 | 1e-158 | KF111321.1 Zea mays cultivar B73 basic leucine zipper transcription factor mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809311.1 | 1e-114 | transcription factor TGAL4-like isoform X2 | ||||
Swissprot | Q53Q70 | 4e-95 | TGAL4_ORYSJ; Transcription factor TGAL4 | ||||
TrEMBL | A0A2T7E565 | 1e-113 | A0A2T7E565_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca00148.1.p | 1e-121 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP25378 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G08320.2 | 1e-82 | bZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.3KG006400.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|