PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG576400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 567aa    MW: 60751.5 Da    PI: 9.9194
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG576400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS348.88.6e-1072045662368
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           +lLl+cAeav+ ++l++a++lL ++ elasp g++ +R+aayf  AL ar+++s  + y+ l+ ++ +  +s +++ a+++++ +sP++
  Pavir.2NG576400.1.p 204 LSLLLRCAEAVAMDQLTEARELLPEIAELASPFGSSPERVAAYFGDALCARVLSSYLGAYSPLALRPLAAAQSRRVAGAFQAYNALSPLV 293
                          689*************************************************************************************** PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                          kfsh+taNqaIl+a++ge+r+H+iD+di+qGlQWp L++ LasRp++p slR+Tg+g+    s + le+tg+rLa+fA++lg+pfef+++
  Pavir.2NG576400.1.p 294 KFSHFTANQAILQALDGEDRLHVIDLDIMQGLQWPGLFHILASRPRKPRSLRVTGLGA----SLDVLEATGRRLADFAASLGLPFEFQPI 379
                          **********************************************************....9**************************8 PP

                 GRAS 182 vakrledleleeL.....rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                            k  +  +  +L     r +++Ea++V++++  h l+d ++s       +++l++sl+Pk++++veq++ h s++Fl rf+eal+yysa
  Pavir.2NG576400.1.p 380 EGKIGHVADAAALlgprhRQQQDEATVVHWMH--HCLYDVTGSDVG----TVRLLRSLRPKLITIVEQDLGH-SGDFLGRFVEALHYYSA 462
                          5554455566666555435666*********9..889988999998....**********************.899************** PP

                 GRAS 267 lfdsleak...lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353
                          lfd+l  +   +++es er+ vEr+llg ei+n+va  g +r+ + + +e+W + l++aGF+pv+l  + a+qa+lll +++++gy++ e
  Pavir.2NG576400.1.p 463 LFDALGDGagaAAAESAERHAVERQLLGAEIRNIVAVGGPKRTGEVR-VERWGDELRRAGFRPVSLAGSPAAQARLLLGMYPWKGYTLVE 551
                          *****55423355667*************************998887.9***************************************** PP

                 GRAS 354 esgslvlgWkdrpLv 368
                          + ++l lgWkd +L+
  Pavir.2NG576400.1.p 552 DAACLKLGWKDLSLL 566
                          ***********9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.604177552IPR005202Transcription factor GRAS
PfamPF035143.0E-104204566IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MIGNKQGHRR PHTHAHPGRP APVIFFRKPH ASPVPGWRRP CRGPRPSIPP AWPRRQLPAT  60
RQADGRPGAP SLALRTGPRQ ANGEIDPSTL ALGAPQSPAL SVAVPSRLSL ASPRGDRVSD  120
SVALPRNELL PDGAMLQGVL SRAPAPATDA PAAMKAKRAP ASPDEEEDGE GRPARGKRQQ  180
LLGLGSAAAA AAEEGPETRG LRLLSLLLRC AEAVAMDQLT EARELLPEIA ELASPFGSSP  240
ERVAAYFGDA LCARVLSSYL GAYSPLALRP LAAAQSRRVA GAFQAYNALS PLVKFSHFTA  300
NQAILQALDG EDRLHVIDLD IMQGLQWPGL FHILASRPRK PRSLRVTGLG ASLDVLEATG  360
RRLADFAASL GLPFEFQPIE GKIGHVADAA ALLGPRHRQQ QDEATVVHWM HHCLYDVTGS  420
DVGTVRLLRS LRPKLITIVE QDLGHSGDFL GRFVEALHYY SALFDALGDG AGAAAAESAE  480
RHAVERQLLG AEIRNIVAVG GPKRTGEVRV ERWGDELRRA GFRPVSLAGS PAAQARLLLG  540
MYPWKGYTLV EDAACLKLGW KDLSLLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-15020956725374Protein SCARECROW
5b3h_A1e-15020956724373Protein SCARECROW
5b3h_D1e-15020956724373Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.48540.0callus| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, cotyledons, shoot apex, leaves and flowers.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG576400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269610.0KJ726961.1 Zea mays clone pUT3661 GRAS transcription factor (GRAS54) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801132.10.0scarecrow-like protein 23
SwissprotQ9FHZ11e-165SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A3L6QTZ50.0A0A3L6QTZ5_PANMI; Scarecrow-like protein 23
STRINGPavir.Ba00637.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-148GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]