PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG372000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 716aa    MW: 78114.9 Da    PI: 4.4818
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG372000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM146.91e-45101362128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          ppGfrF+Ptdeelv ++Lk+++ + + +    +++vd+yk++P++Lp+  ++++++++w+fFs+ d+ky++g+r++r+t +gyWkatgkd
  Pavir.2NG372000.1.p  10 PPGFRFSPTDEELVLYFLKRRIVSGRPSP--YVADVDVYKSHPSHLPErsALQTGDRQWFFFSRMDRKYPNGSRASRTTGDGYWKATGKD 97 
                          8********************88888555..69*************94357888999********************************* PP

                  NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          + ++  +g++vg kktLv+++grap+ge+tdWvmhey+l
  Pavir.2NG372000.1.p  98 RFICGGGGRAVGNKKTLVYHHGRAPRGERTDWVMHEYTL 136
                          *************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-527159IPR003441NAC domain
PROSITE profilePS5100551.8079159IPR003441NAC domain
PfamPF023658.0E-2410136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MEAPPPRRWP PGFRFSPTDE ELVLYFLKRR IVSGRPSPYV ADVDVYKSHP SHLPERSALQ  60
TGDRQWFFFS RMDRKYPNGS RASRTTGDGY WKATGKDRFI CGGGGRAVGN KKTLVYHHGR  120
APRGERTDWV MHEYTLLADA LPPAAQGRES YALYKLFQKS GAGPKNGEQY GAPFREEDWL  180
DDEEGVIAVA PASPVPNNNN CPATVEEHEI ADRELPVEDL DELLSQIGND KEEFGEAQLD  240
FSTPATSHGQ SQGWLSEGGN KAEVVDASIS SGAGVAAENT CTGGLPLGDI EQLLMQMSDD  300
QQNAELFSDL STSVPQLQLQ CDDHQVWLDA HREQEVCAPD PTTSSGVVVT AECTDTEFGD  360
LEGLLLQIAN DQDMIEPQSD LSGPIPYHNF NQVGIGDFHE SHGALVGNLS CIVQESTFDP  420
QTEPRSQFPQ SSLTNVPFSG ETNSSEGTSV PRSVSGLISY NSQDADEEFL EINDFFDLEG  480
VEQSANCTAT EHLISATNGM FDNLEYSDAH TFLPGPFDTV GVVAENQFFD YGNTGIQDQG  540
YQYTTEVTTH NQAALNVRSH MKHTHVVLPS HASGTLNLHA ANEPPNRSST ASQSWFNAAL  600
SALLDSVPSS PALAAEIENT VINKTLQRIS SFRSHQASGE DNTVINRTLH RISSFRSQQV  660
ASEQPSTPTI QVTRGGRLMF LSLLVILAAV MWTFTAGSAG SALNFCKGLW KSSSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-421013616140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.125290.0callus| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG372000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802095.10.0NAC domain-containing protein 82-like
TrEMBLA0A2T7EU370.0A0A2T7EU37_9POAL; Uncharacterized protein
STRINGPavir.J04800.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91282840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.17e-66NAC domain containing protein 17