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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.2NG348000.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
NAC |
| Protein Properties |
Length: 311aa MW: 35259.5 Da PI: 8.2132 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.2NG348000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 154.7 | 4.1e-48 | 37 | 169 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWka 85
pGfrFhPtd+el+++yL++kve+k +++ +ikevdiyk++PwdLp+ + ++++++wyfF+ r +ky+++ r+nr+t sg+Wka
Pavir.2NG348000.1.p 37 FPGFRFHPTDQELLSFYLARKVEKKGFSI-GIIKEVDIYKHDPWDLPNearhvvQGAGDKEDWYFFCLRGRKYRNSIRANRVTGSGFWKA 125
69***************************.99**************9646665433336679**************************** PP
NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
tg dk+++ + +ge glkk+Lv+y+g+a +g+ktdW+mhe+rl
Pavir.2NG348000.1.p 126 TGIDKPIHGSaGGECLGLKKSLVYYRGSAGRGTKTDWMMHEFRL 169
********9878889***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 311 aa
Download sequence Send
to blast |
MEEKKPSERV KETLPENRRL ESGGGVEVGT EDDDLVFPGF RFHPTDQELL SFYLARKVEK 60
KGFSIGIIKE VDIYKHDPWD LPNEARHVVQ GAGDKEDWYF FCLRGRKYRN SIRANRVTGS 120
GFWKATGIDK PIHGSAGGEC LGLKKSLVYY RGSAGRGTKT DWMMHEFRLP STASSAAELQ 180
DAEIWTICRI FKRNMSYSRR CQQQKQENGS KRCQQQQQLQ YYYDYRYHHQ HGASMTSSFG 240
SSEASEAYPT DNHQPFLLHG LHGVSSAKTT TTSSGLMGAP LLPSMSVWSE LTTFRDSGST 300
WDELGRIMEI *
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 5e-49 | 38 | 196 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 5e-49 | 38 | 196 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 5e-49 | 38 | 196 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 5e-49 | 38 | 196 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 5e-49 | 38 | 196 | 22 | 171 | NAC domain-containing protein 19 |
| 3swm_B | 5e-49 | 38 | 196 | 22 | 171 | NAC domain-containing protein 19 |
| 3swm_C | 5e-49 | 38 | 196 | 22 | 171 | NAC domain-containing protein 19 |
| 3swm_D | 5e-49 | 38 | 196 | 22 | 171 | NAC domain-containing protein 19 |
| 3swp_A | 5e-49 | 38 | 196 | 22 | 171 | NAC domain-containing protein 19 |
| 3swp_B | 5e-49 | 38 | 196 | 22 | 171 | NAC domain-containing protein 19 |
| 3swp_C | 5e-49 | 38 | 196 | 22 | 171 | NAC domain-containing protein 19 |
| 3swp_D | 5e-49 | 38 | 196 | 22 | 171 | NAC domain-containing protein 19 |
| 4dul_A | 5e-49 | 38 | 196 | 19 | 168 | NAC domain-containing protein 19 |
| 4dul_B | 5e-49 | 38 | 196 | 19 | 168 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JF282870 | 5e-91 | JF282870.1 Panicum virgatum clone F12_PVCAG-3 microsatellite sequence. |
| Publications
? help Back to Top |
- Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
Plant Signal Behav, 2016. 11(6): p. e1181245
[PMID:27159137] - Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
Nat Plants, 2016. 2: p. 16013
[PMID:27249348] - Shahnejat-Bushehri S, et al.
Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
Front Plant Sci, 2017. 8: p. 214
[PMID:28326087] - Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
Plant J., 2017. 92(6): p. 1106-1120
[PMID:29032592] - Ebrahimian-Motlagh S, et al.
JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
Front Plant Sci, 2017. 8: p. 2118
[PMID:29326734]
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