PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG344500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 347aa MW: 36206.4 Da PI: 7.8314 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.3 | 1.1e-17 | 170 | 224 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++ +++ +++ LAk+l+L rqV vWFqNrRa+ k Pavir.2NG344500.1.p 170 RKKLRLSKEQSAFLEESFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 224 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 126.5 | 1.2e-40 | 170 | 260 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlskeq+++LEesF+e+ +L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr + Pavir.2NG344500.1.p 170 RKKLRLSKEQSAFLEESFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-A 258 69*************************************************************************************9.5 PP HD-ZIP_I/II 91 lk 92 lk Pavir.2NG344500.1.p 259 LK 260 55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.84E-18 | 155 | 227 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.3E-18 | 155 | 220 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.989 | 166 | 226 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-15 | 168 | 230 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.53E-15 | 170 | 227 | No hit | No description |
Pfam | PF00046 | 4.0E-15 | 170 | 224 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 201 | 224 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.3E-10 | 226 | 260 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.4E-24 | 226 | 269 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MELGLSLGET MADAGRDLVL GLGMGAGARR DGEAEPGRRE LEFGARRCGR RPSPEPAVRL 60 TLLPGLVPGL GLPWPPPSEA TRHLEASTRG FDVNRAPSLS AAGAAAEDDE ERDDAGAAGA 120 AAASSSPNNS AGSFPTDFSA HGQTGPGPSG GGGDRAGSRA SDEDDGGSAR KKLRLSKEQS 180 AFLEESFKEH ATLNPKQKLA LAKQLNLRPR QVEVWFQNRR ARTKLKQTEV DCEYLKRCCE 240 TLTEENRRLQ KELAELRALK TVHPFYMHLP ATTLSMCPSC ERVASTSAPA AAAPAQAASS 300 SPSPAGGGGI AAAPPEQRPS SFAALFSSPL SRPLAAQPQP QAPASS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 218 | 226 | RRARTKLKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.23980 | 1e-146 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG344500.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036447 | 0.0 | BT036447.1 Zea mays full-length cDNA clone ZM_BFb0114O05 mRNA, complete cds. | |||
GenBank | KJ726911 | 0.0 | KJ726911.1 Zea mays clone pUT3456 HB transcription factor (HB11) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802237.1 | 1e-163 | homeobox-leucine zipper protein HOX11-like | ||||
Swissprot | Q67UE2 | 1e-141 | HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11 | ||||
TrEMBL | A0A2T7ESW7 | 1e-164 | A0A2T7ESW7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J36719.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5209 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 6e-60 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG344500.1.p |