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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.2NG313000.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
NAC |
Protein Properties |
Length: 318aa MW: 34314.8 Da PI: 6.9343 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.2NG313000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 142.6 | 2.2e-44 | 33 | 172 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
lppGfrF+Ptdeel+++yL++k+++ + +++evd+y++ePwdL + ++ yfF++r+ k ++g r+nrat++gyWk+tgkdk
Pavir.2NG313000.1.p 33 LPPGFRFRPTDEELLTHYLAPKAADAGFAP-AAVREVDLYRAEPWDLLPAGGGGGGGGYFFCRRSVKFPSGLRTNRATRAGYWKSTGKDK 121
79*************************888.78**************53444556688******************************** PP
NAM 91 evlsk.............kgelvglkktLvfykgrapkgektdWvmheyrl 128
vl++ +ge g++ktLvfy+grap+gekt+Wvmheyrl
Pavir.2NG313000.1.p 122 VVLRQhggggggigigsgHGEPLGMRKTLVFYRGRAPTGEKTNWVMHEYRL 172
****988887777777766667***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 318 aa
Download sequence Send
to blast |
MYGHVRCLTM SMLHPACVTM SVRFRTGGGD GRLPPGFRFR PTDEELLTHY LAPKAADAGF 60 APAAVREVDL YRAEPWDLLP AGGGGGGGGY FFCRRSVKFP SGLRTNRATR AGYWKSTGKD 120 KVVLRQHGGG GGGIGIGSGH GEPLGMRKTL VFYRGRAPTG EKTNWVMHEY RLVQGHGCYT 180 SPLLAAGTQS EWVICRMFMR KPPGETSLLE EETVLRPPPH LRPSIDSCNG GETPAATNHF 240 PGALAVAPAD HQHESACQSV LQLNHEELLM NYSVSDYASA AAASAAENCY DELCSGSIDD 300 LLPQLLDYEG LPFLQDF*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 4e-41 | 33 | 201 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-41 | 33 | 201 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-41 | 33 | 201 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-41 | 33 | 201 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-41 | 33 | 201 | 20 | 169 | NAC domain-containing protein 19 |
3swm_B | 4e-41 | 33 | 201 | 20 | 169 | NAC domain-containing protein 19 |
3swm_C | 4e-41 | 33 | 201 | 20 | 169 | NAC domain-containing protein 19 |
3swm_D | 4e-41 | 33 | 201 | 20 | 169 | NAC domain-containing protein 19 |
3swp_A | 4e-41 | 33 | 201 | 20 | 169 | NAC domain-containing protein 19 |
3swp_B | 4e-41 | 33 | 201 | 20 | 169 | NAC domain-containing protein 19 |
3swp_C | 4e-41 | 33 | 201 | 20 | 169 | NAC domain-containing protein 19 |
3swp_D | 4e-41 | 33 | 201 | 20 | 169 | NAC domain-containing protein 19 |
4dul_A | 4e-41 | 33 | 201 | 17 | 166 | NAC domain-containing protein 19 |
4dul_B | 4e-41 | 33 | 201 | 17 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |