PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG199200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 543aa    MW: 57784.7 Da    PI: 7.2804
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG199200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.87e-263104462128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknra......tksgyW 83 
                          ++G+rF+Ptde+l+ ++L+ k +g+++++  ++k++d+y++ P+ +++   v  ++  wy Fs+rd+ky++g r++r+       + gyW
  Pavir.2NG199200.1.p 310 AAGVRFRPTDEDLI-FFLRLKHAGREIPV-GFFKDFDVYQASPEAIKAacGVVDDDGCWYAFSPRDRKYKNGARPKRSvveeggQQLGYW 397
                          58************.9*************.99**************9533344456699******************64666655589** PP

                  NAM  84 katgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          k+  k   vl++    +  ++g  ++L+f+ g++p+g +t W m+ey++
  Pavir.2NG199200.1.p 398 KSNTKLAYVLTSgkgeGAVVTGNVTSLTFHVGHQPDGAQTPWKMKEYAI 446
                          *********998665445559**************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-34306471IPR003441NAC domain
PROSITE profilePS5100533.82309471IPR003441NAC domain
PfamPF023653.9E-13311445IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MVIISPVDDL ASSHPPAAGA DGRAFQPPAS NPEPLLFDNL IRGAAAYPAA AGTAAWNPHP  60
HPPYASTATS SGGFNPSSSP LLSGSMMDPF SEQPPPLRIV RPAMVEPSYC YHLPTMLGFP  120
PPAFAPGPFA QGASATPAPV LVPMQTASVE PAYYYPQAQG AAGEEAATIQ KAQETTTPTP  180
RRRGRPRKTA AAVASKPVFK KAPKRATARS KRAASQQATA SATNDLATMA GQALVQKPEQ  240
AASVAAASTS DAAQAPAPCR NPMPPLLCQE QWRLQPTCSS SSLSPGGQAA AVVAGQPEVT  300
LPYAYAETFA AGVRFRPTDE DLIFFLRLKH AGREIPVGFF KDFDVYQASP EAIKAACGVV  360
DDDGCWYAFS PRDRKYKNGA RPKRSVVEEG GQQLGYWKSN TKLAYVLTSG KGEGAVVTGN  420
VTSLTFHVGH QPDGAQTPWK MKEYAIPENQ HAPDGSATRL NDWVVCKLFY KERRKKKDKS  480
GEDGENADQA GGDQGTQMVS TDLQQAHGDF ERDLCVEDYP GYDDAFAEQT HAANCNILHR  540
QS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-2130847716171NO APICAL MERISTEM PROTEIN
1ut4_B8e-2130847716171NO APICAL MERISTEM PROTEIN
1ut7_A8e-2130847716171NO APICAL MERISTEM PROTEIN
1ut7_B8e-2130847716171NO APICAL MERISTEM PROTEIN
3swm_A8e-2130847719174NAC domain-containing protein 19
3swm_B8e-2130847719174NAC domain-containing protein 19
3swm_C8e-2130847719174NAC domain-containing protein 19
3swm_D8e-2130847719174NAC domain-containing protein 19
3swp_A8e-2130847719174NAC domain-containing protein 19
3swp_B8e-2130847719174NAC domain-containing protein 19
3swp_C8e-2130847719174NAC domain-containing protein 19
3swp_D8e-2130847719174NAC domain-containing protein 19
4dul_A8e-2130847716171NAC domain-containing protein 19
4dul_B8e-2130847716171NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181187RRGRPRK
2472477RRKKKD
3473478RKKKDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG199200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6S3Y60.0A0A3L6S3Y6_PANMI; Uncharacterized protein
STRINGPavir.J00150.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131302130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.25e-25NAC domain containing protein 47