PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2NG159300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 350aa MW: 36679.2 Da PI: 6.3669

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG159300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.9	8.6e-09	165	212	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k + Ka +L + ++Y++sLq Pavir.2NG159300.1.p 165 SHSLAERVRREKISQRMKFLQDLVPGC----NKVVGKALMLDEIINYVQSLQ 212 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.94E-17	159	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.77E-10	159	216	No hit	No description
PROSITE profile	PS50888	15.123	161	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.5E-17	161	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.4E-6	165	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.4E-9	167	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MDSDYVASLL MGHSAAPGLD FAALDGGFLD ALCGAGAGLF GAPGVAAGAG GGGSPEGSSV 60 SDPAWARARD SGNARKRKAP PAGTANGKEA CLGKAGEPKG PDGKKARVGA GGSPVKPKVE 120 EATASDGSVE DKGQKKGKGK SAKPPVEPPK DYVHVRARRG QATDSHSLAE RVRREKISQR 180 MKFLQDLVPG CNKVVGKALM LDEIINYVQS LQQQVEFLSM KLATVNPQLD FSNLSTLLHK 240 DMYQACGPSV NSVFPLESAG AAFPFCNQAD LFQSFGSGAM EDQCSLSLLD TALPHTTNPQ 300 FAFQKQQRDF WEDGLQNALP IVSEQGQENV VSAPSFDGQL QADQTKIEF*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MDSDYVASLL MGHSAAPGLD FAALDGGFLD ALCGAGAGLF GAPGVAAGAG GGGSPEGSSV  60
SDPAWARARD SGNARKRKAP PAGTANGKEA CLGKAGEPKG PDGKKARVGA GGSPVKPKVE  120
EATASDGSVE DKGQKKGKGK SAKPPVEPPK DYVHVRARRG QATDSHSLAE RVRREKISQR  180
MKFLQDLVPG CNKVVGKALM LDEIINYVQS LQQQVEFLSM KLATVNPQLD FSNLSTLLHK  240
DMYQACGPSV NSVFPLESAG AAFPFCNQAD LFQSFGSGAM EDQCSLSLLD TALPHTTNPQ  300
FAFQKQQRDF WEDGLQNALP IVSEQGQENV VSAPSFDGQL QADQTKIEF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.4826	0.0	callus\| leaf\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG159300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804696.1	0.0	transcription factor BHLH089-like
Swissprot	Q9CAA9	2e-54	BH049_ARATH; Transcription factor bHLH49
TrEMBL	A0A3L6QSR4	0.0	A0A3L6QSR4_PANMI; Transcription factor bHLH49-like
STRING	Pavir.Ba01626.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP919	38	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.2	6e-55	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.2NG159300.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]