PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG131200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 994aa    MW: 110923 Da    PI: 7.8783
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG131200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.97.7e-1896187193
                          EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.g 86 
                          f+kvltp+dv+k+  lv+pk+ a      g +      lt++d++g++W+++++y+k  +r++++k W++Fv+ +gL +gD+v F++  g
  Pavir.2NG131200.1.p  96 FDKVLTPADVGKR--LVIPKEDAVWPflpG-V---VLVLTFKDPNGKQWSFRCSYSKDLRRCYMSKEWSRFVRKKGLHAGDTVSFYRGlG 179
                          89*********97..9******95556643.3...2479***********************************************5434 PP

                          S.SEE..E CS
                   B3  87 r.sefelv 93 
                              ++++
  Pavir.2NG131200.1.p 180 AaGHGRFF 187
                          44555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-2392177IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-1993180IPR015300DNA-binding pseudobarrel domain
CDDcd100175.52E-1994176No hitNo description
PfamPF023621.5E-1596189IPR003340B3 DNA binding domain
SMARTSM010191.9E-1096189IPR003340B3 DNA binding domain
PROSITE profilePS508639.982128194IPR003340B3 DNA binding domain
SuperFamilySSF520582.04E-26421587IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.105.8E-24425594IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF525402.02E-41597864IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3005.5E-6641761IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009318.1E-36643892IPR002182NB-ARC
PRINTSPR003644.0E-6644659No hitNo description
PRINTSPR003644.0E-6714728No hitNo description
PRINTSPR003644.0E-6811825No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 994 aa     Download sequence    Send to blast
MEEPGSGASS RCRAADGESQ DEQGDASVEV ELDLFPGPPF RVQESAPRRP GLSYSSSGSG  60
ITFSAGSQFS KKGGDGSRSR GDRAPPATAV GKEHLFDKVL TPADVGKRLV IPKEDAVWPF  120
LPGVVLVLTF KDPNGKQWSF RCSYSKDLRR CYMSKEWSRF VRKKGLHAGD TVSFYRGLGA  180
AGHGRFFVDW KLRADDAHRR RLRLPIPKQP PMATPNSELA DPCSASSISR LSQQLVHVRT  240
TISPSSGAQV SFAWLTRVRS LAADAQDCLQ DLHYRMMQAV LGVGSHEKVI MRSNVSGNSS  300
RATSSSFFQS ASLVELTVIS IGDKLEGLQH GRPELSVAAP RNSSKLISVK HLVVRCILLC  360
RGILGIMSAA GADEVKATRE IPVFASDDLT YAGRAKDSMM DSPNMPTNVT DPIYLLPTFI  420
RSMLYLDLSN CSSLAQVHPS LCTLHHLAAL NLSRCYSLHT LPVSLGMLQN LQILLLSNCQ  480
KLRNLPVSLC DLSKLRLLDL SGCSRLETLP YSFVTLRQME ILNLSYCKGL KELPQPFGIL  540
QGLKYLNLSG CHGLDLDVEC KLANLMCVTL SPHSNIQGFS DSFRDLKNHL DMSRWWKKSR  600
LHPQCNPKAI PFHTYKSHEQ SIIERLLSVN FDEGGVTSDH VVTSICIVGE SGMGKTDLVQ  660
RIYNNKLILD TFDLRIWVPA CDKKRLLEKI VEFTTFSYCC DSPMSVLEEI LIEELTGKRF  720
LLVLDDCDYE SSQFWNELLK LFNVCSKGSA VITTTKNKEV ANHVGATQTY YLSSLSKEDC  780
FMIFRRHALG GLDMKSYPPL ESVGWKVVEK CGGNALCIKS LSGLLCHSEI GLSQMDMLVD  840
GILPALRLCY DLLPSHLQQC FKFCSLFPKD YHFIKHHIVR LWIAQGFVFP EEGCQPEETG  900
LHYFDELFCR SFFQLSPFHN DNEDKFVMHE LFHDLAQSVS KNECFRSEEP FCSFPENISH  960
LSLVPSNFKT VTLIKEIKNL QSLLVVRRFF PGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C2e-29637968177521Disease resistance RPP13-like protein 4
6j5t_F2e-29637968177521Disease resistance RPP13-like protein 4
6j5t_G2e-29637968177521Disease resistance RPP13-like protein 4
6j5t_L2e-29637968177521Disease resistance RPP13-like protein 4
6j5t_O2e-29637968177521Disease resistance RPP13-like protein 4
6j5u_A2e-29637968177521Disease resistance RPP13-like protein 4
6j5v_A2e-29637968177521Disease resistance RPP13-like protein 4
6j5w_A2e-29637968177521Disease resistance RPP13-like protein 4
6j6i_C2e-29637968177521Disease resistance RPP13-like protein 4
6j6i_F2e-29637968177521Disease resistance RPP13-like protein 4
6j6i_G2e-29637968177521Disease resistance RPP13-like protein 4
6j6i_L2e-29637968177521Disease resistance RPP13-like protein 4
6j6i_O2e-29637968177521Disease resistance RPP13-like protein 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG131200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459691.20.0uncharacterized protein LOC8057272
TrEMBLA0A1E5VKQ60.0A0A1E5VKQ6_9POAL; Disease resistance protein RGA2
STRINGPavir.Ba02315.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125771216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.14e-23B3 family protein