PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG122200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 251aa    MW: 27348.2 Da    PI: 8.2418
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG122200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.62.5e-211662147
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                         krien+  rqv fskRr+g++KKA+ELS+LC+a v  i+fs+ g+ +
  Pavir.2NG122200.1.p 16 KRIENEEARQVCFSKRRQGLFKKASELSILCGAMVGAIVFSPAGRSF 62
                         79****************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.848868IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-33867IPR002100Transcription factor, MADS-box
CDDcd002652.00E-37978No hitNo description
SuperFamilySSF554553.14E-27981IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-201030IPR002100Transcription factor, MADS-box
PfamPF003195.0E-251764IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-203045IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-204566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MVKGQKSKGR QKIEIKRIEN EEARQVCFSK RRQGLFKKAS ELSILCGAMV GAIVFSPAGR  60
SFSFGHPSID EIISRFLNSV NPNGPAPGGP SHDSAVSSSV TDTVTLKLNM ELLELEQSLE  120
SEKKKQERLQ EATEKLMGER MMQWLTANIF ELGLDELQEF QKKLEEIHVV VKEKINQVLV  180
QARPYTPAGS LPQLPMEIAS TSQSTNPLAS TAPSSRAAPI GGFQMNYPLL SGGVHGVGGM  240
ENFPSNQNHG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-159104288Myocyte-specific enhancer factor 2B
1tqe_Q3e-159104288Myocyte-specific enhancer factor 2B
1tqe_R3e-159104288Myocyte-specific enhancer factor 2B
1tqe_S3e-159104288Myocyte-specific enhancer factor 2B
6c9l_A3e-159104288Myocyte-specific enhancer factor 2B
6c9l_B3e-159104288Myocyte-specific enhancer factor 2B
6c9l_C3e-159104288Myocyte-specific enhancer factor 2B
6c9l_D3e-159104288Myocyte-specific enhancer factor 2B
6c9l_E3e-159104288Myocyte-specific enhancer factor 2B
6c9l_F3e-159104288Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG122200.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699030.11e-122agamous-like MADS-box protein AGL29
TrEMBLK4A0041e-121K4A004_SETIT; Uncharacterized protein
STRINGPavir.Ba03370.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-29AGAMOUS-like 62