PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG058500.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 620aa MW: 70119.2 Da PI: 7.9633 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 50 | 1e-15 | 112 | 190 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 f n Y+ e+GF +r ++s++ ++++t ++ vCs+egk+e ++ + + rt+Cka+++++k++d+ w++ +l+ +HnH+l+ Pavir.2NG058500.6.p 112 FCNLYSWELGFGIRWNNSTND-AEESVTVQEIVCSCEGKPELSSAA---------SVRTDCKARIQLHKSDDNGWYILELRGDHNHPLS 190 7899***********998887.7777**************998766.........9*******************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.2E-12 | 112 | 190 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.7E-12 | 329 | 388 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.198 | 579 | 615 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 620 aa Download sequence Send to blast |
MHFVGRPSPR RGAVAGGARA AAPGGRSGGS GGAGAEAGVT QDGGSSVDGG AQSRACLGRR 60 HRSSFPDERE PKLGRVSAYE ESLKKYVDNK SNVVINPAVG MSFDSRADAF DFCNLYSWEL 120 GFGIRWNNST NDAEESVTVQ EIVCSCEGKP ELSSAASVRT DCKARIQLHK SDDNGWYILE 180 LRGDHNHPLS GACSESLIWP SHNHLEPYTK GMVCHLRDSN VDLSKTRYFI YSFFGAMKKV 240 LFNKWALKSL CESITTELEL PEDYVCKTLE LFDGFGSLRR DDPSFQFRVE LDYTTSQFKT 300 VLWTNGRSRM QYAQFGDAIT FDTTYRRGVL MRHETVESFK WVFREFVTLM GGKAPSTILT 360 GQCNVMEVAI QEVLPYTTHR WCKVHVLSKE NEFLGPICSK KSGFKDDFQK ITDSMLTVRE 420 FESAWKHLLD KYNLHGNAFL SQIYDSRHKW AKPYFKGKFC AKQTSMQRNE CANHMFKGYV 480 PRNRSINMFV RHYNELQSYL ESKESFEESR SGKRPRVMSK GVPVEEHAAK IYTRAMFEKF 540 DEIIFQSGSY VVDEKERGKA YLARHIRSDC RESWSQVEFE VTIRAEDGAV VCECGLGEHL 600 GIPCCHAVNV RFTLSEIVT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG058500.6.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002459424.2 | 0.0 | protein FAR1-RELATED SEQUENCE 8 | ||||
TrEMBL | A0A2T7ELG9 | 0.0 | A0A2T7ELG9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba03656.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-50 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG058500.6.p |