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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.2NG036300.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
bHLH |
Protein Properties |
Length: 510aa MW: 53770.6 Da PI: 6.115 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.2NG036300.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 56.8 | 3.9e-18 | 319 | 365 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
hn+ ErrRRdriN+++ L+el+P++ K +Ka+iL +A+eY+ksLq
Pavir.2NG036300.1.p 319 VHNMSERRRRDRINEKMRALQELVPHC-----NKTDKASILDEAIEYLKSLQ 365
6*************************8.....6******************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 510 aa
Download sequence Send
to blast |
MPDAPLSQTD AAHGFLRSLN LGERRESVPG FSVLRRLVGA SLVLPTAELL RTSCGALLQE 60 EAGGRRSELS SSSITCSLSL FSCCFCSTSC LATILWLKSG MGVRYLGAPG SKKWILAMDG 120 GERPAAAQKR PFPPDGELVE LLWQDGAVVA HSQAQRAFAG AGNTGASGVT GEAAAAAWLP 180 GGGALGGDVY SQLWQSIALA QADGRVGAPA RARPPAQSGN SAAGSSRTAG EVGSSFCGSN 240 LVAAARHLDD AIDDVAALPP QPPDEPGAST SSGWNSNALL KRSRDDCDGR SEDADFDTVD 300 ETPPSRRPAS KRRTRAAEVH NMSERRRRDR INEKMRALQE LVPHCNKTDK ASILDEAIEY 360 LKSLQMQVQI MWMSTGMAPM MLPGAHQLMP PMSMGLNSTC MPPAAQFLSH VQTVPPFLSN 420 PLPNQIPQIS PAFTSAPNVT NQVQSNRVAQ PRNPFLHPND ALTSTPQLPS LFGYGPQMAQ 480 ENEIQELLAC TAAPALDAEP PSSSDGTGT*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 310 | 327 | KRRTRAAEVHNMSERRRR |
2 | 323 | 328 | ERRRRD |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Highly expressed in the node portions of the stem. Expressed in the leaves and the basal part of shoots. {ECO:0000269|PubMed:22984180}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
Publications
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- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] - Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224] - Todaka D, et al.
Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress. Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52 [PMID:22984180]
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