PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG569000.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 248aa MW: 27665.2 Da PI: 10.0527 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 51.6 | 2.1e-16 | 159 | 202 | 5 | 49 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 +r++r++kNRe+A rsR+RK+a++ eLe+kv+ Le+eN++L+ +l Pavir.2KG569000.3.p 159 RRQKRMIKNRESAARSRARKQAYTNELENKVARLEEENQRLR-KL 202 79***************************************9.44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.3E-14 | 153 | 201 | No hit | No description |
SMART | SM00338 | 1.0E-9 | 155 | 210 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.484 | 157 | 201 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.5E-13 | 159 | 201 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.0E-10 | 159 | 201 | No hit | No description |
CDD | cd14707 | 3.23E-21 | 159 | 203 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 162 | 177 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MGVQTMSSHG DDGRRGLPRQ GSVYNLTLTE VETRLGEPLR SMNLDDLLRT VLPAAPATEP 60 APKKTVDEVW RDIQSASGAR QPAMGEMTLE DFLSRAGVTV DAGPHWLHQH QHQHQYVVPL 120 GSPAVDGVGV FLSQVAGRKR GAAAAADGDG VVEERTVERR QKRMIKNRES AARSRARKQA 180 YTNELENKVA RLEEENQRLR KLKMLPPLEP PPEHEQRPVP QPEHERRPVT QPEEAKQPLR 240 RRNSATF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 161 | RKRGAAAAADGDGVVEERTVERRQK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}. | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG569000.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU975790 | 3e-73 | EU975790.1 Zea mays clone 500961 EEL mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025799932.1 | 1e-129 | ABSCISIC ACID-INSENSITIVE 5-like protein 5 | ||||
Refseq | XP_025799933.1 | 1e-129 | ABSCISIC ACID-INSENSITIVE 5-like protein 5 | ||||
Refseq | XP_025799934.1 | 1e-129 | ABSCISIC ACID-INSENSITIVE 5-like protein 5 | ||||
Swissprot | Q9C5Q2 | 6e-49 | AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3 | ||||
TrEMBL | A0A2T7F0D1 | 1e-128 | A0A2T7F0D1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Bb03699.1.p | 1e-179 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41070.3 | 2e-39 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG569000.3.p |
Publications ? help Back to Top | |||
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