PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG535600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GeBP
Protein Properties Length: 479aa    MW: 52171 Da    PI: 7.2544
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG535600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573109.91.8e-3478177297
               DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqk 87 
                          lfqrlw+eeDeiv+L+G+ +f+a +g+   +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ ++sg  +sf+++h+q 
  Pavir.2KG535600.1.p  78 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMHRRLQLDFSKSQLVEKLRRLKRKYRNCVSRlRESGATFSFRSPHEQA 167
                          79************************99877778***************************************8999************* PP

               DUF573  88 ifelskkiWg 97 
                          ife+++ iW+
  Pavir.2KG535600.1.p 168 IFEIARNIWR 177
                          *********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.2E-3079176IPR007592Protein of unknown function DUF573
SuperFamilySSF525404.89E-10415472IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3001.7E-6422471IPR027417P-loop containing nucleoside triphosphate hydrolase
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MPPTGDDPSA AAGISFPDVG GGDSEDADFA GAHLLDPTDP SLPNPTASSA TGLPHAVPAG  60
GSGGGPVTSG NGGERRPLFQ RLWTEEDEIV ILRGFAEFTA ARGTAFASHQ YDTDPFYEDM  120
HRRLQLDFSK SQLVEKLRRL KRKYRNCVSR LRESGATFSF RSPHEQAIFE IARNIWRPTN  180
KHGRDPSADS DDEDAAVNTS PNGEVKSPSS GRQRRRRRAT DFAAPAGNAP ATSMVQPPQP  240
VQLQPVSVPV KMEDSLPALP QNPMPVTVTM DGSEPLRLPV MSPQSGVSDA EKSCLTPLLK  300
EMMRAVINVG TNPFGAKLSE PPLGLPMEGE KWRKQRILEL EVYLKRIELL QDQAKVEAVS  360
PSQPCDSNTL RNAVNNSQGC SPKISVNLFL HSSGVIAAKF QYNQLLVDAF RKIPKASWNV  420
KERIPTDVES KFMPFQREGI RFVLQHGGRA LIADEMGLGK TLQAIAVASC LHDFCQFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG535600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0416520.0BT041652.1 Zea mays full-length cDNA clone ZM_BFb0025B02 mRNA, complete cds.
GenBankEU9699720.0EU969972.1 Zea mays clone 337956 hypothetical protein mRNA, complete cds.
GenBankJX4284550.0JX428455.1 Zea mays subsp. mays clone pUT3049 GBP12 GeBP type transcription factor mRNA, partial cds.
GenBankKJ7267970.0KJ726797.1 Zea mays clone pUT2289 GeBP transcription factor (GBP12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799483.10.0probable transcription factor At3g04930
TrEMBLA0A1E5UXC00.0A0A1E5UXC0_9POAL; Uncharacterized protein
STRINGPavir.Bb03462.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.11e-40DNA-binding storekeeper protein-related transcriptional regulator