PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG413900.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 783aa MW: 89453.3 Da PI: 6.9102 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 70.1 | 5.2e-22 | 54 | 140 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y++++GFsvrk k+++ +++i +++++Cskeg + +e + +++ +r+ trt+Cka+++ + +++g+w v++++ HnH+la Pavir.2KG413900.3.p 54 LYCDYGHRIGFSVRKGKQSYFIGTKNIRTKDYYCSKEGLKYDEPVT--EANFNRPDTRTNCKAMIRFRVDEKGRWTVIRFVPVHNHQLA 140 7********************9*******************99988..9999***********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.2E-20 | 54 | 140 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.1E-33 | 262 | 355 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.273 | 543 | 579 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.4E-5 | 549 | 576 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 9.6E-6 | 554 | 581 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 783 aa Download sequence Send to blast |
MDSSQDFQEE RHQRRENGEE TEKAADYGNA LSRKEATEEL LGCVVHSEEE AYRLYCDYGH 60 RIGFSVRKGK QSYFIGTKNI RTKDYYCSKE GLKYDEPVTE ANFNRPDTRT NCKAMIRFRV 120 DEKGRWTVIR FVPVHNHQLA KPGERHMLRS AKSLAVGKSG VIVPSASTES HPINGFSDMI 180 EGCTPENSGY TIRECYNQVG MQGITVIEAG DGQNLVSYFK RRTNEEGMFY WDVQVDQEGR 240 MTNFFYRDGK CRNDYDCFGD AIIFDTTYRT NKYSLICAPF VGVDHHWQNV VFGCAFLLDE 300 SVASYVWVFK SFLESMGGQS PKSIFTDQDE AIMQAIEQVF PNTQHCFSYW HILKNAQSHL 360 GSLNTSQAFQ TLFTKCMQGS DSEEDFEESW TAMLREYKLQ DNSWLIDLHR FRHKWCSAFN 420 KDTFDGGINS SQWGEVSNNI LSGISDENTS LTRFALLLEK VVKHLRRNES EEDFRCSQTA 480 PVRAVKHSTV LKQAAESYTH RIYKLFEAEF LDGCGATSCH ETSSGGNLLR FEITMQGRGS 540 KVWPVALDTS TMEITCACRK FERMGLLCSH ALKVFTLQNV DTIPEKYVLQ RWTKDARRSM 600 YKLTQDDSTQ QECTEAELAY RNRAMQYAYN LIIKSQELEE SRKIFWDSLE TGEKALEVFF 660 EMRSMRSQAA KDASNKEKKK KKPTKGPSSK KAKQAPAASS TDLELGVQTN EHQYQSSQDA 720 QGNATIGRPY YYQAFPTAPI QANQMYMHPN MHTMPLCTPQ QDHLSAYAAV RPNSNFAGAK 780 NI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.23691 | 0.0 | callus| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG413900.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025801014.1 | 0.0 | protein FAR1-RELATED SEQUENCE 9-like isoform X2 | ||||
TrEMBL | A0A2T8KRX9 | 0.0 | A0A2T8KRX9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Bb02863.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-100 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG413900.3.p |