PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG413900.12.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 783aa    MW: 89453.3 Da    PI: 6.9102
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG413900.12.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.15.2e-2254140290
                  FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                            Y++Y++++GFsvrk k+++   +++i +++++Cskeg + +e  +  +++ +r+ trt+Cka+++ + +++g+w v++++  HnH+la
  Pavir.2KG413900.12.p  54 LYCDYGHRIGFSVRKGKQSYFIGTKNIRTKDYYCSKEGLKYDEPVT--EANFNRPDTRTNCKAMIRFRVDEKGRWTVIRFVPVHNHQLA 140
                           7********************9*******************99988..9999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.2E-2054140IPR004330FAR1 DNA binding domain
PfamPF105516.1E-33262355IPR018289MULE transposase domain
PROSITE profilePS509669.273543579IPR007527Zinc finger, SWIM-type
PfamPF044341.4E-5549576IPR007527Zinc finger, SWIM-type
SMARTSM005759.6E-6554581IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 783 aa     Download sequence    Send to blast
MDSSQDFQEE RHQRRENGEE TEKAADYGNA LSRKEATEEL LGCVVHSEEE AYRLYCDYGH  60
RIGFSVRKGK QSYFIGTKNI RTKDYYCSKE GLKYDEPVTE ANFNRPDTRT NCKAMIRFRV  120
DEKGRWTVIR FVPVHNHQLA KPGERHMLRS AKSLAVGKSG VIVPSASTES HPINGFSDMI  180
EGCTPENSGY TIRECYNQVG MQGITVIEAG DGQNLVSYFK RRTNEEGMFY WDVQVDQEGR  240
MTNFFYRDGK CRNDYDCFGD AIIFDTTYRT NKYSLICAPF VGVDHHWQNV VFGCAFLLDE  300
SVASYVWVFK SFLESMGGQS PKSIFTDQDE AIMQAIEQVF PNTQHCFSYW HILKNAQSHL  360
GSLNTSQAFQ TLFTKCMQGS DSEEDFEESW TAMLREYKLQ DNSWLIDLHR FRHKWCSAFN  420
KDTFDGGINS SQWGEVSNNI LSGISDENTS LTRFALLLEK VVKHLRRNES EEDFRCSQTA  480
PVRAVKHSTV LKQAAESYTH RIYKLFEAEF LDGCGATSCH ETSSGGNLLR FEITMQGRGS  540
KVWPVALDTS TMEITCACRK FERMGLLCSH ALKVFTLQNV DTIPEKYVLQ RWTKDARRSM  600
YKLTQDDSTQ QECTEAELAY RNRAMQYAYN LIIKSQELEE SRKIFWDSLE TGEKALEVFF  660
EMRSMRSQAA KDASNKEKKK KKPTKGPSSK KAKQAPAASS TDLELGVQTN EHQYQSSQDA  720
QGNATIGRPY YYQQAFPTAP IQANQMYMHP NMHTMPLCTP QDHLSAYAAV RPNSNFAGAK  780
NI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.236910.0callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG413900.12.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801015.10.0protein FAR1-RELATED SEQUENCE 9-like isoform X3
TrEMBLA0A2T8KRX90.0A0A2T8KRX9_9POAL; Uncharacterized protein
STRINGPavir.Bb02863.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-100FAR1-related sequence 5