PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG341000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 498aa    MW: 53821.1 Da    PI: 9.4357
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG341000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.82e-16159218155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  Pavir.2KG341000.1.p 159 SIYRGVTRHRWTGRFEAHLWDkNSWNEtqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 218
                          57*******************888866656446*************************98 PP
2AP251.62.3e-16261312155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Pavir.2KG341000.1.p 261 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEYRG 312
                          89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.57E-17159228IPR016177DNA-binding domain
PfamPF008471.3E-12159218IPR001471AP2/ERF domain
PROSITE profilePS5103220.719160226IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-16160228IPR001471AP2/ERF domain
SMARTSM003806.5E-27160232IPR001471AP2/ERF domain
PRINTSPR003677.1E-6161172IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-18261322IPR016177DNA-binding domain
PfamPF008472.3E-12261312IPR001471AP2/ERF domain
CDDcd000189.51E-23261322No hitNo description
Gene3DG3DSA:3.30.730.101.2E-17262321IPR001471AP2/ERF domain
PROSITE profilePS5103218.36262320IPR001471AP2/ERF domain
SMARTSM003801.7E-25262326IPR001471AP2/ERF domain
PRINTSPR003677.1E-6302322IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MDQKNGRERE RGRRERGPAG LHHFSPLLSF YLLCSFGICP ALQTPAQPIL PPHHPAIPNP  60
CPPSLSLHVF KTATSRGHHS WPPTSLPSSS SSSSSLSLSS SFHSSLAMAK PRKNSAAAAA  120
AAGNSSSSGA AAAGDAGVRV KPKRTRKSVP RESPSQRSSI YRGVTRHRWT GRFEAHLWDK  180
NSWNETQNKK GKQVYLGAYD DEEAAARAYD LAALKYWGPD TILNFPASAY EEELKEMEGQ  240
SREEYIGSLR RKSSGFSRGV SKYRGVARHH HNGRWEARIG RVFGNKYLYL GTYATQEEAA  300
MAYDMAAIEY RGLNAVTNFD LSRYIKWLRP GADGGVAAAA AAQNPHPMLG ALAQQQLPPA  360
DAVVDAFQQD RRRAEFPLPP RTSLGHTPTT SALSLLLQSP KFKEMIERTS AAESGTTTSS  420
SSSPPTPPSP SPPPPPSAQA QHHAAREGGA ASPQCGFPED IQTFFGCEDV AGVDVDALFF  480
GDLAAYASPA FHFELDL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.145040.0root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG341000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0396320.0BT039632.1 Zea mays full-length cDNA clone ZM_BFc0035F11 mRNA, complete cds.
GenBankBT0551110.0BT055111.1 Zea mays full-length cDNA clone ZM_BFc0006C10 mRNA, complete cds.
GenBankKJ7275880.0KJ727588.1 Zea mays clone pUT5448 AP2-EREBP transcription factor (EREB143) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799409.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN41e-107AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2S3H0330.0A0A2S3H033_9POAL; Uncharacterized protein
STRINGPavir.Bb02213.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.12e-95ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]