PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG332700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | AP2 | ||||||||
Protein Properties | Length: 490aa MW: 53070.5 Da PI: 9.6432 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.9 | 1.9e-16 | 150 | 209 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g Pavir.2KG332700.1.p 150 SIYRGVTRHRWTGRFEAHLWDkNSWNEtqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 209 57*******************888866656446*************************98 PP | |||||||
2 | AP2 | 51.6 | 2.3e-16 | 252 | 303 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Pavir.2KG332700.1.p 252 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEYRG 303 89****99**********99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.57E-17 | 150 | 219 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-12 | 150 | 209 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.719 | 151 | 217 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-16 | 151 | 219 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.5E-27 | 151 | 223 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-6 | 152 | 163 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.69E-22 | 252 | 313 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-18 | 252 | 313 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.2E-12 | 252 | 303 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.36 | 253 | 311 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-17 | 253 | 312 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-25 | 253 | 317 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-6 | 293 | 313 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0040008 | Biological Process | regulation of growth | ||||
GO:0045723 | Biological Process | positive regulation of fatty acid biosynthetic process | ||||
GO:1901959 | Biological Process | positive regulation of cutin biosynthetic process | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MLERKRGRRE RGPAGLHHFS PLLSFYLLCS FGICPALQTP AQPILPPHHP AIPNPCPPSL 60 SLRVFKTATS RGHHSWPPTS LPSSPSASSL SLSSSFHSSL AMAKPRKNSA AAAGNSSSSG 120 PAAAGDAGVR VKPKRTRKSV PRESPSQRSS IYRGVTRHRW TGRFEAHLWD KNSWNETQNK 180 KGKQVYLGAY DDEEAAARAY DLAALKYWGP DTILNFPASA YEEELKEMEG QSREEYIGSL 240 RRKSSGFSRG VSKYRGVARH HHNGRWEARI GRVFGNKYLY LGTYATQEEA AMAYDMAAIE 300 YRGLNAVTNF DLSRYIKWLR PGADGGVAAA AAAQNPHPML GALAQQQLPP ADAVVDAFQQ 360 DRRRAEFPLP PRTSLGHTPT TSALSLLLQS PKFKEMIERT SAAESGTTTS SSSSPPTPPS 420 PSPPPPPPSA QAQHHAAREG GAASPQCGFP EDIQTFFGCE DVAGVDVDAL FFGDLAAYAS 480 PAFHFELDL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.14504 | 0.0 | root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG332700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039632 | 0.0 | BT039632.1 Zea mays full-length cDNA clone ZM_BFc0035F11 mRNA, complete cds. | |||
GenBank | BT055111 | 0.0 | BT055111.1 Zea mays full-length cDNA clone ZM_BFc0006C10 mRNA, complete cds. | |||
GenBank | KJ727588 | 0.0 | KJ727588.1 Zea mays clone pUT5448 AP2-EREBP transcription factor (EREB143) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025799409.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g16060 isoform X2 | ||||
Swissprot | Q94AN4 | 1e-107 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A2S3H033 | 0.0 | A0A2S3H033_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Bb02213.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3319 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 2e-95 | ARIA-interacting double AP2 domain protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG332700.1.p |
Publications ? help Back to Top | |||
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