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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.2KG307200.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
NAC |
| Protein Properties |
Length: 398aa MW: 44396.9 Da PI: 7.6642 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.2KG307200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 165.9 | 1.4e-51 | 14 | 140 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
pGfrFhPtdeelv +yLk+k+++k+l++ e i+++diyk++PwdLpk ++++eke+yf+++rd+ky+++ r+nr+t +g+Wkatg+d++
Pavir.2KG307200.1.p 14 LPGFRFHPTDEELVGFYLKRKIQQKPLSI-ELIRQLDIYKYDPWDLPKLASTGEKELYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRP 102
69***************************.89***************88889999*********************************** PP
NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
++s+ +++ +glkk+Lvfykgra kg ktdW+mheyr+
Pavir.2KG307200.1.p 103 IYSSeGTKCIGLKKSLVFYKGRAAKGIKTDWMMHEYRM 140
***956667***************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 398 aa
Download sequence Send
to blast |
MDERADKDKS DEVLPGFRFH PTDEELVGFY LKRKIQQKPL SIELIRQLDI YKYDPWDLPK 60
LASTGEKELY FYCPRDRKYR NSARPNRVTG AGFWKATGTD RPIYSSEGTK CIGLKKSLVF 120
YKGRAAKGIK TDWMMHEYRM PSLNCPSLPK TPKDKNIPAN DAWAICRIFK KPSSVAQRVL 180
SHSWGPQSIA TTEPELLSAL QSIQASHFAL ESSSCSPNQY NSQHCLQGWQ QQKLNSSQDG 240
SSCKIINFNH SPSSPQLSEK YIHSSPIILP FGTQSPQKSS AITSVLLSMA PGIVNSMNEA 300
LPNTEMEQLE PSYGYTADWG IDTNGGIGNK DDDPYSRKPS NGFSSGIECG SQQKIKFPFD 360
LEVDSPDDWT SSMPCSLPCP PPPTEMSNSS STEKYYA*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 8e-52 | 15 | 177 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 8e-52 | 15 | 177 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 8e-52 | 15 | 177 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 8e-52 | 15 | 177 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 8e-52 | 15 | 177 | 19 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 8e-52 | 15 | 177 | 19 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
