PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG264900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NF-YB | ||||||||
Protein Properties | Length: 198aa MW: 22120 Da PI: 5.0709 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 45.8 | 1.5e-14 | 35 | 125 | 6 | 88 |
NF-YB 6 rflPianvsrimkkvlPana........kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 ++lP a v r++k l a + kda e + fi ++++ a+d c++ kr+tin+dd+l al ++ f ++vepl++ l Pavir.2KG264900.1.p 35 EELPKAIVRRLVKDKLAHVAgggegaevIVNKDAMAAFAESARIFIHYLSATANDMCKESKRQTINADDVLKALDEMEFSEFVEPLRISL 124 578899999999988865431111122158899999**************************************************9988 PP NF-YB 88 k 88 + Pavir.2KG264900.1.p 125 Q 125 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.4E-27 | 32 | 125 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.3E-9 | 36 | 108 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 8.93E-23 | 37 | 126 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MPRKATKEAE PQPAAAAQEE PAPAPAAAMA EAEVEELPKA IVRRLVKDKL AHVAGGGEGA 60 EVIVNKDAMA AFAESARIFI HYLSATANDM CKESKRQTIN ADDVLKALDE MEFSEFVEPL 120 RISLQGQYCY LRPTIHFVRY SMWLSICRTS LQEFRNKNAD KRSEANKKQK EKRRKLNEES 180 LPQKENDPAD DAEENDD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG264900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT060559 | 1e-109 | BT060559.1 Zea mays full-length cDNA clone ZM_BFb0015O22 mRNA, complete cds. | |||
GenBank | EU962697 | 1e-109 | EU962697.1 Zea mays clone 244791 DNA polymerase epsilon subunit 3 mRNA, complete cds. | |||
GenBank | EU964046 | 1e-109 | EU964046.1 Zea mays clone 275447 DNA polymerase epsilon subunit 3 mRNA, complete cds. | |||
GenBank | KJ728301 | 1e-109 | KJ728301.1 Zea mays clone pUT6581 CCAAT-DR1 transcription factor (CADR16) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025801207.1 | 9e-89 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A3L6QRV5 | 2e-90 | A0A3L6QRV5_PANMI; DNA polymerase epsilon subunit 3 | ||||
STRING | Pavir.Bb01701.1.p | 4e-87 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10414 | 37 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 1e-30 | nuclear factor Y, subunit B11 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG264900.1.p |