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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.2KG257200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
bHLH |
| Protein Properties |
Length: 225aa MW: 24560.3 Da PI: 7.0633 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.2KG257200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 36.2 | 1.1e-11 | 59 | 101 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L
Pavir.2KG257200.1.p 59 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 101
79*********************66......****************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 225 aa
Download sequence Send
to blast |
MGFLDVIEPK APLGEGGLGV CKVEPGLAEG GGAFGAGAAP PAPASKKKRV EGMPSKNLMA 60
ERRRRKRLND RLSMLRSVVP KISKMDRTSI LGDTIDYMKE LLERIKLLQE EIDEQQQETP 120
GVLSVFRELN PNEMVARNTP KFDVERKESG ETRVEIYCAA KPGLLLSTVS TLENLGLDIQ 180
QCVVSCFNDF GMHASCSEMQ RERISADALK QELFKNAGYG GGCL*
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 46 | 66 | KKRVEGMPSKNLMAERRRRKR |
| 2 | 60 | 67 | ERRRRKRL |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT042911 | 0.0 | BT042911.1 Zea mays full-length cDNA clone ZM_BFc0062P05 mRNA, complete cds. |
| GenBank | EU963538 | 0.0 | EU963538.1 Zea mays clone 263876 mRNA sequence. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Sharma N, et al.
NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
Development, 2016. 143(4): p. 682-90
[PMID:26758694] - Chen YS, et al.
Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
Plant Mol. Biol., 2017. 93(3): p. 299-311
[PMID:27866313] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470]
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