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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.2KG257200.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
bHLH |
Protein Properties |
Length: 225aa MW: 24560.3 Da PI: 7.0633 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.2KG257200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 36.2 | 1.1e-11 | 59 | 101 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L
Pavir.2KG257200.1.p 59 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 101
79*********************66......****************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 225 aa
Download sequence Send
to blast |
MGFLDVIEPK APLGEGGLGV CKVEPGLAEG GGAFGAGAAP PAPASKKKRV EGMPSKNLMA 60 ERRRRKRLND RLSMLRSVVP KISKMDRTSI LGDTIDYMKE LLERIKLLQE EIDEQQQETP 120 GVLSVFRELN PNEMVARNTP KFDVERKESG ETRVEIYCAA KPGLLLSTVS TLENLGLDIQ 180 QCVVSCFNDF GMHASCSEMQ RERISADALK QELFKNAGYG GGCL*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 46 | 66 | KKRVEGMPSKNLMAERRRRKR |
2 | 60 | 67 | ERRRRKRL |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT042911 | 0.0 | BT042911.1 Zea mays full-length cDNA clone ZM_BFc0062P05 mRNA, complete cds. |
GenBank | EU963538 | 0.0 | EU963538.1 Zea mays clone 263876 mRNA sequence. |
Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Sharma N, et al.
NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] - Chen YS, et al.
Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]
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