PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG208900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HB-other
Protein Properties Length: 381aa    MW: 42017.2 Da    PI: 6.9015
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG208900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.73.9e-081475756
                         --HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
             Homeobox  7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                         f ++++ e+e+  ++  n  p+++  + LA+k            ++ +qV +WFqNrR+ ++
  Pavir.2KG208900.1.p 14 FLPSEVAEMEARLQQlnNAIPTRAVLQTLADKFsasperagrvAIQPKQVWNWFQNRRYSHR 75
                         55677888888888666999***************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0027781IPR001356Homeobox domain
SuperFamilySSF466891.58E-91377IPR009057Homeodomain-like
CDDcd000867.18E-51375No hitNo description
PROSITE profilePS5007110.091377IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-61380IPR009057Homeodomain-like
PfamPF000461.6E-51475IPR001356Homeobox domain
PfamPF167194.6E-41133260IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MGRPPSTGAP AFRFLPSEVA EMEARLQQLN NAIPTRAVLQ TLADKFSASP ERAGRVAIQP  60
KQVWNWFQNR RYSHRAKTTR AAPPPATKMT PSGADHIQHA ANSSAYRAAQ PSAAAAHHGS  120
SPSAGKNPVE GVQVEFEAKS ARDGAWYDVA AFLSHRLFES GEPEVRVRFS GFGAEEDEWI  180
NVRKCVRQRS LPCEATECVA VLPGDLILCF QEGKEQALYF DARVLDAQRR RHDVRGCRCR  240
FLVRYDHDSS EEIVPLRKVC RRPETDYRLQ ILHAARAAAT IDSHTPPKEV KVEATSNEKS  300
PAEQKPPKQH KMMDVNTDEV SMVASVEPEV TPGKTVAPLP SATPETRNSS SDVVMKEAEA  360
SSVVEDDDEV QVVEKMKDGE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A3e-471362646134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B3e-471362646134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A3e-471362646134SHH1 SAWADEE
4iur_B3e-471362646134SHH1 SAWADEE
4iut_A3e-471362646134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B3e-471362646134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A3e-471362646134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B3e-471362646134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A3e-471362646134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B3e-471362646134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.51510.0callus| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG208900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0402810.0BT040281.1 Zea mays full-length cDNA clone ZM_BFc0075M16 mRNA, complete cds.
GenBankBT0876720.0BT087672.1 Zea mays full-length cDNA clone ZM_BFb0153J12 mRNA, complete cds.
GenBankKJ7276020.0KJ727602.1 Zea mays clone pUT5462 HB transcription factor (HB55) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802897.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2-like
SwissprotQ8RWJ71e-122SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A3L6QQ050.0A0A3L6QQ05_PANMI; Uncharacterized protein
STRINGPavir.Bb01334.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.31e-100sequence-specific DNA binding transcription factors;sequence-specific DNA binding