PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG161700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 237aa MW: 26066.7 Da PI: 6.9685 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.8 | 2.1e-21 | 16 | 62 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k+ien++ rqv fskRr+g++KKA+ELS+LC+a va ++fs +g+ + Pavir.2KG161700.1.p 16 KPIENETARQVRFSKRRQGLFKKASELSILCGAMVAAVVFSASGRSF 62 78****************************************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.1E-31 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.343 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.49E-26 | 9 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-19 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.49E-31 | 14 | 79 | No hit | No description |
Pfam | PF00319 | 2.0E-23 | 18 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-19 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-19 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MAKGKKSKGR KKTEIKPIEN ETARQVRFSK RRQGLFKKAS ELSILCGAMV AAVVFSASGR 60 SFSFGHPSFD DVVNRFLSPV PTDAPAPGGN EEGSMTDAVR RLNMEYLELE QSLEAEEKRK 120 ERLQEATEKL MGERVMQWLN ANIFELGLDE LQEFQKKLEE IHVIVKQKVD EVMVEGRQTP 180 RSLPHPPMEM ASTSQTPSSS LALIDGFQVS NDPLLLGGGV HGVGGLGNFP NNQNLG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mnm_A | 5e-14 | 6 | 75 | 14 | 83 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
1mnm_B | 5e-14 | 6 | 75 | 14 | 83 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG161700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012699030.1 | 1e-124 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A2T7EMP1 | 1e-128 | A0A2T7EMP1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Bb00803.1.p | 1e-172 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 2e-27 | AGAMOUS-like 29 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG161700.1.p |