PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG005200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 330aa    MW: 37409.6 Da    PI: 8.7824
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG005200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.5e-1884130148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT eEd +lv++v+q+G + W+ Ia++++ gR +kqc++rw+++l
  Pavir.2KG005200.1.p  84 KGQWTLEEDRKLVKLVEQFGLRKWSYIAQMLP-GRVGKQCRERWHNHL 130
                          799*****************************.*************97 PP
2Myb_DNA-binding53.84.3e-17136178145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          ++ W+ eEd  l++a+k+ G++ W+ Ia++++ gRt++++k++w+
  Pavir.2KG005200.1.p 136 KDVWSDEEDMVLIQAHKEVGNK-WTEIAKCLP-GRTENSIKNHWN 178
                          578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.50579134IPR017930Myb domain
SuperFamilySSF466896.83E-3281177IPR009057Homeodomain-like
SMARTSM007171.2E-1483132IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-2985137IPR009057Homeodomain-like
PfamPF139214.3E-1887144No hitNo description
CDDcd001671.95E-1487130No hitNo description
PROSITE profilePS5129418.861135185IPR017930Myb domain
SMARTSM007171.2E-16135183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-22138183IPR009057Homeodomain-like
CDDcd001677.49E-13139181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MLPSATFNDL QYFAERGTKK PIFDHAASID RTVESQLHLL TPKTEVSHLK ENGLVSYKAC  60
ETNGRFVPRK KTYSISLKKA NVVKGQWTLE EDRKLVKLVE QFGLRKWSYI AQMLPGRVGK  120
QCRERWHNHL RPNIKKDVWS DEEDMVLIQA HKEVGNKWTE IAKCLPGRTE NSIKNHWNAT  180
KRRQFARRCS HTSSKQGPKS GTLLQNYIKG LGIGPSKNFI ASLVQPTLLP SSSLPATPRE  240
GPAKMIDERL EHNNPSNILD SQGILSIHEH NCSKAQSREE LAMAPICDDF SIGMLCDSLF  300
DTKEETCFQV YTVDDDMNMN CTFNHVDQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-45821852105MYB PROTO-ONCOGENE PROTEIN
1mse_C8e-45821852105C-Myb DNA-Binding Domain
1msf_C8e-45821852105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.421770.0leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG005200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432521e-45AC243252.2 Panicum virgatum clone PV_ABa094-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796038.11e-155transcription factor MYB41-like
TrEMBLA0A3L6T7990.0A0A3L6T799_PANMI; Uncharacterized protein
STRINGPavir.J25000.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.13e-65myb domain protein 98