PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG552600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 643aa MW: 70105.3 Da PI: 4.3218 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.5 | 5.4e-49 | 19 | 155 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya.........tgkrknratk 79 l+pGfrFhPtdeelv++yL+++v g++l++ ++i+evd+y++ePwdLp +++++++ +wyfF++ d+k a g+r+nrat Pavir.1NG552600.1.p 19 LAPGFRFHPTDEELVSYYLRRRVLGRRLRV-DAIAEVDLYRLEPWDLPslSRIRSRDAQWYFFARLDRKVAgagaggrggPGNRTNRATP 107 579***************************.99***************5448999999***********99877777665577******* PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +gyWk+tgkd+ev++ +g++vg+kktLvf+ grapkge+++Wvmheyrl Pavir.1NG552600.1.p 108 RGYWKTTGKDREVYH-RGKAVGMKKTLVFHAGRAPKGERSNWVMHEYRL 155 ***************.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-55 | 15 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.498 | 19 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.1E-27 | 21 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 643 aa Download sequence Send to blast |
MSTSLSPPDS SPPPAEVPLA PGFRFHPTDE ELVSYYLRRR VLGRRLRVDA IAEVDLYRLE 60 PWDLPSLSRI RSRDAQWYFF ARLDRKVAGA GAGGRGGPGN RTNRATPRGY WKTTGKDREV 120 YHRGKAVGMK KTLVFHAGRA PKGERSNWVM HEYRLLDADG PQDLHVVCRI FQKHGSGPQN 180 GAQYGAPYME EEWEEEDDAI ENAPANGTSA GMATITCTVD ESNEEDENGY CKTNELAQAH 240 GMLSSPEMAP LKAQGSKDTG EGSCADGVIS LEEIIQEPLS AINAENVDRS EGQNATDDNF 300 SVDDLLSACP RKDNDYVGQD CTLNGSYPAD GDDTHWPLRA YSNQNYANGT LSAEEFFDTQ 360 NDSNGNTYSE YQQVDGFPAP HQVDGSMVFY DAPSDYNLVD GNDDFVYLND LLNEPFGNES 420 LFDGDDMMAY FDATENDFKY DILGSAQDSN YQLADMPTNF AQKGDNKDKF ALDGISKSLE 480 ANTQYGASSS GSLKDMYPDT AVPGVPTDDT VDKTFGKRLA SMLGSIPAPP AMASEPSATG 540 KSVGALSAVS PSSIRVTAGI IQLDGLTFSG VSERWPLQKN GDFNLLLSFT VESDVSSKPA 600 GFEQATRIST IPMVLRSGMY LFFVSAMILL LSYKVGSCVY SR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-43 | 15 | 155 | 11 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.9744 | 0.0 | callus| leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG552600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817703.1 | 0.0 | NAC domain-containing protein 53-like | ||||
TrEMBL | A0A2S3GUQ2 | 0.0 | A0A2S3GUQ2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa00085.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12931 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 1e-61 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG552600.1.p |