PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG534100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GeBP
Protein Properties Length: 324aa    MW: 35581.1 Da    PI: 4.4354
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG534100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57347.83.9e-15147235397
               DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                          fqr ws +De+ +L +l  ++ ++g+ p+ d  a+   + +s++   +s   l  Ki+ LK+++ +  kk   g+    sk+hd+  f+l
  Pavir.1NG534100.1.p 147 FQRTWSTDDEVRILEALAAYRLEHGALPQPD--ALATVLAGSLDNSgYSPALLQGKIKALKRRYSMAAKK---GER--PSKDHDRRLFDL 229
                          9************************888776..6778889999755277777889************999...555..5799******** PP

               DUF573  92 skkiWg 97 
                          sk++Wg
  Pavir.1NG534100.1.p 230 SKSVWG 235
                          *****9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.4E-18147235IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAPKRSALPP PPPPASDDET ASGSGSEEED EEQIAYSPPP SAAPKIPAPP PPQMGQESED  60
SEEDEEEEGE EEEEEEEEND NHVAPPPATK NPSPPPPNRE ESESSGDEEE EETDDEAPQQ  120
KHAPSHEAER KGAKPSSGDD KKPGAPFQRT WSTDDEVRIL EALAAYRLEH GALPQPDALA  180
TVLAGSLDNS GYSPALLQGK IKALKRRYSM AAKKGERPSK DHDRRLFDLS KSVWGPVTAA  240
ANGGALREVS EMCELYPYLA EEVKALQKAH LGMFKREFLM IDDEKARALD TKIKRQRLHQ  300
LKVHQRGHDL TKEVTRTLID LVD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291296KIKRQR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.42960.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG534100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954058.21e-116uncharacterized protein LOC101755591
TrEMBLA0A2S3GTM41e-169A0A2S3GTM4_9POAL; Uncharacterized protein
STRINGPavir.J00866.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67292737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.11e-10DNA-binding storekeeper protein-related transcriptional regulator