PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG532800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 704aa MW: 76510.3 Da PI: 6.292 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.6 | 6.8e-21 | 17 | 72 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q+++Le++F+++++p++++r +L+++lgL+ rq+k+WFqNrR+++k Pavir.1NG532800.1.p 17 KKRYHRHTPRQIQQLEAMFKECPHPDENQRMQLSRELGLEPRQIKFWFQNRRTQMK 72 688999***********************************************998 PP | |||||||
2 | START | 151.9 | 5.4e-48 | 216 | 441 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS START 2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla... 77 +a +a++el+++a+a++++W + + e +n d++ ++f++ ++ ++e +r+sg+v+m + lv ++d++ +W e ++ Pavir.1NG532800.1.p 216 MATRAMDELIRMAQAGDQLWARAAgpdgrEVLNVDTYDSIFSKPGSsfrgpdVHVEGSRDSGLVFMSAIGLVDMFMDSS-KWMEFFPaiv 304 5789********************999999999999999997766699*******************************.********** PP .EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEEEEEEEC CS START 78 .kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe..sssvvRaellpSgiliepks 158 a t++v+ +g g l+lm+ el ++sp+vp R+ f+Ry+rq + g w+i+dvSvd + + R+ +lpSg+li +++ Pavir.1NG532800.1.p 305 sNARTIDVLVNGmagrsGSLVLMYEELHVMSPVVPtRELCFLRYCRQIEHGLWAIADVSVDLQPCDARfgA--PPRSCRLPSGCLIADMA 392 9************************************************************9999887432..357779*********** PP TCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 159 nghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 ng+skvtwveh+++++r+p h l+r l+ sg+a+ga +w+a+lqr ce+ Pavir.1NG532800.1.p 393 NGYSKVTWVEHMEVEDRVPiHLLYRDLILSGAAFGAHRWLAALQRACER 441 ***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.88E-20 | 6 | 74 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.9E-22 | 12 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.815 | 14 | 74 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-19 | 15 | 78 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.24E-19 | 16 | 75 | No hit | No description |
Pfam | PF00046 | 2.0E-18 | 17 | 72 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 49 | 72 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 44.182 | 206 | 444 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.03E-32 | 207 | 442 | No hit | No description |
CDD | cd08875 | 5.82E-108 | 210 | 440 | No hit | No description |
SMART | SM00234 | 8.0E-39 | 215 | 441 | IPR002913 | START domain |
Pfam | PF01852 | 3.5E-40 | 216 | 441 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 9.6E-5 | 323 | 411 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.22E-19 | 459 | 695 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009828 | Biological Process | plant-type cell wall loosening | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 704 aa Download sequence Send to blast |
MDFGDDVMDG SDAQHRKKRY HRHTPRQIQQ LEAMFKECPH PDENQRMQLS RELGLEPRQI 60 KFWFQNRRTQ MKAQHERQDN CFLRAENDKI RCENIAMREA LRNVICPTCG GPPVADDYFD 120 EQKLRMENAR LKEELDRVSS LTSKYLGRPF TQLPPVQPLS MSSSLDLSVG GLGSPALGPS 180 LDLDLLSGGS SGYGHHPAFH LPTAVPEMER PMMAEMATRA MDELIRMAQA GDQLWARAAG 240 PDGREVLNVD TYDSIFSKPG SSFRGPDVHV EGSRDSGLVF MSAIGLVDMF MDSSKWMEFF 300 PAIVSNARTI DVLVNGMAGR SGSLVLMYEE LHVMSPVVPT RELCFLRYCR QIEHGLWAIA 360 DVSVDLQPCD ARFGAPPRSC RLPSGCLIAD MANGYSKVTW VEHMEVEDRV PIHLLYRDLI 420 LSGAAFGAHR WLAALQRACE RCACLATAGM PPRDIAGVTP EGNRSMMKLS QRMVSGFCAS 480 LSASQLHRWT TLSGPNDVGV RVMVHRSTDP GQPSGVVLSA ATSIWLPVPC DRVFAFICDE 540 NTRSQWDVLS HGNPVQEVSR IPNGSHPGNC ISLLRGLNAS QNSMLILQES CTDASGSLVV 600 YAPIDIPAAN VVMSGEDPSA IPLLPSGFTI LPDGRAGAAP SSSSAAGPLG GSPAAGSLVT 660 VAFQILVSSL PSSKLNAESV ATVNSLISTT VEQIKAALNC ASH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00232 | DAP | Transfer from AT1G73360 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG532800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728523 | 0.0 | KJ728523.1 Zea mays clone pUT6828 HB transcription factor (HB83) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828617.1 | 0.0 | homeobox-leucine zipper protein ROC8-like | ||||
Swissprot | Q69T58 | 0.0 | ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8 | ||||
TrEMBL | A0A3L6RUM3 | 0.0 | A0A3L6RUM3_PANMI; Homeobox-leucine zipper protein ROC8-like | ||||
STRING | Si016483m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2912 | 37 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG532800.1.p |