PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG526200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRF | ||||||||
Protein Properties | Length: 392aa MW: 42363.2 Da PI: 9.5077 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78 | 9.5e-25 | 89 | 132 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CE+H+hrg++rsrk++e Pavir.1NG526200.1.p 89 DPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVE 132 79***************************************998 PP | |||||||
2 | QLQ | 58 | 2.8e-20 | 18 | 52 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+q+L++Q+l+yK+La+++P+P++L+ +++ Pavir.1NG526200.1.p 18 PFTASQWQELEHQALIYKCLASGKPIPSYLMPPLR 52 9******************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 6.1E-11 | 17 | 53 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.814 | 18 | 53 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.7E-14 | 18 | 50 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.573 | 89 | 133 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.1E-20 | 90 | 132 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MMMMSGRAGG GAGAGRYPFT ASQWQELEHQ ALIYKCLASG KPIPSYLMPP LRRILDSALA 60 TSPSLAFPPQ PSLGWGCFGM GFSRKPDEDP EPGRCRRTDG KKWRCSKEAY PDSKYCEKHM 120 HRGKNRSRKP VEMSLATPAP SSNATSANSA TANTTTTSSP APTYHRPAPA AAHDAAPYHA 180 LYGGSPYAAA STRPASAYHA SAQVSPFHLH LDTTHPHPPP SYYSVDQRDY AYGHAAKEVG 240 EHAFFSDGTT ERDRQAAGQW QFKNLGVEPK PSAASLFSVG GYGNAAATAY AADMSKEEDE 300 EERRRQQQQH CFVLGADLRL ERPSGHDAAP RRSRSGPSST SGRTRRQTRA APGWGSTARR 360 SFPCPSPWRP TTSPSPPATV MMSKTSLCDC C* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.7379 | 0.0 | callus| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG526200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF184748 | 0.0 | KF184748.1 Saccharum hybrid cultivar R570 clone BAC 035B09 complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792586.1 | 0.0 | growth-regulating factor 1 | ||||
Swissprot | Q6AWY8 | 1e-141 | GRF1_ORYSJ; Growth-regulating factor 1 | ||||
TrEMBL | A0A2T7FCW6 | 0.0 | A0A2T7FCW6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J03212.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5741 | 36 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 3e-49 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG526200.1.p |