PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG523500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 217aa MW: 22982.6 Da PI: 4.8675 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.8 | 2e-16 | 13 | 63 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++kGVr +k +g+Wv+eIr p++ r r++lg+++ +e+Aa+a +aa +l+g Pavir.1NG523500.1.p 13 KKFKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDAPEKAARAFDAAFVCLRG 63 59*****999.**********933...5*********************999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.13E-25 | 13 | 76 | No hit | No description |
PROSITE profile | PS51032 | 21.18 | 14 | 74 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.4E-9 | 14 | 62 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-17 | 14 | 75 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-26 | 14 | 75 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-28 | 14 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-8 | 15 | 26 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-8 | 37 | 53 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MSSSSPEMEG SSKKFKGVRK RKWGKWVSEI RLPNSRERIW LGSYDAPEKA ARAFDAAFVC 60 LRGPGAAGAD LNFPDTPPPC RAGGCSSDSQ EVQAAALSHA NRAAVTAQQA AAALMDVDDG 120 SMLPWGSVAH DMAGALGTGS ADEVVAPVHA DGSIDWRPVM AHLPPLFSPT GWGSNAYDFL 180 QVLPPPGAAD EDMEDSIHGA TASLWSFDLR DSYFRY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 15 | 21 | KGVRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00151 | DAP | Transfer from AT1G19210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG523500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794487.1 | 1e-141 | ethylene-responsive transcription factor ERF017-like | ||||
Swissprot | Q84QC2 | 8e-37 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | A0A2S3GTS8 | 1e-140 | A0A2S3GTS8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa00296.1.p | 1e-156 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 2e-34 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG523500.1.p |
Publications ? help Back to Top | |||
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