PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG486700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GeBP | ||||||||
Protein Properties | Length: 323aa MW: 35458.9 Da PI: 4.436 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 47.4 | 5.2e-15 | 146 | 234 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 fqr ws +De+ +L +l ++ ++g+ +da+ + +s++ ++ l K++ LK+++ + kk g+ sk+hd+ f+l Pavir.1NG486700.1.p 146 FQRTWSTDDEVRILEALAAYRLEHGA--LPQLDALATVLAGSLDNSgYNPALLQGKVKALKRRYSMAAKK---GER--PSKDHDRRLFDL 228 9************************5..567889999******876256666778************999...555..5799******** PP DUF573 92 skkiWg 97 sk++Wg Pavir.1NG486700.1.p 229 SKSVWG 234 *****9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 7.8E-19 | 146 | 234 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MAPKRSAPAP PPPASDEETA SGSGSEGEEE DEEEIAYSPP PSAAPKTTAP PPQKGQQSDD 60 FEEEEDEEEE EEEEEEEENA NHVAPPPATK NPSPPPPNRE ESESSGDEEE ETDDEAPQQK 120 HAPSRELERK GAKPSSGDDK KPGAPFQRTW STDDEVRILE ALAAYRLEHG ALPQLDALAT 180 VLAGSLDNSG YNPALLQGKV KALKRRYSMA AKKGERPSKD HDRRLFDLSK SVWGPVTAAA 240 NGGAPREVSE MCELYPYLAE EVKALQKAHP GMFKREFTMI DDDKARALDT KIKKQRLHQL 300 KVLQRGHDLT KEVTRTLIDL VD* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.4296 | 0.0 | callus| leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG486700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004954058.2 | 1e-118 | uncharacterized protein LOC101755591 | ||||
TrEMBL | A0A2S3GTM4 | 1e-175 | A0A2S3GTM4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa00346.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6729 | 27 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 2e-10 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG486700.1.p |