PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG467100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NF-YB | ||||||||
Protein Properties | Length: 262aa MW: 27739.8 Da PI: 8.3005 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 163.3 | 3.5e-51 | 32 | 125 | 4 | 97 |
NF-YB 4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 dr++ ianv+rim++vlP++akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa++ lGf+dyvepl+vyl++yre+ Pavir.1NG467100.1.p 32 FDRLMQIANVIRIMRRVLPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSRLGFDDYVEPLSVYLHRYREF 121 69**************************************************************************************** PP NF-YB 94 egek 97 ege Pavir.1NG467100.1.p 122 EGEA 125 *985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.7E-44 | 32 | 126 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.35E-35 | 33 | 128 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.6E-24 | 36 | 99 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 7.9E-17 | 63 | 81 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 66 | 82 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 7.9E-17 | 82 | 100 | No hit | No description |
PRINTS | PR00615 | 7.9E-17 | 101 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MDPASGFLPS GAANGTAAAG GAGSSIRRRR RFDRLMQIAN VIRIMRRVLP SHAKISDDAK 60 ETIQECVSEY ISFITGEANE RCQREQRKTI TAEDVLWAMS RLGFDDYVEP LSVYLHRYRE 120 FEGEARGVVG LGVPGAARGG DHHHHPSMAL KSRAPGAMSP PHHHDMQLHA SMYGGAPAVP 180 PPPGGPHHGH GFVGMPHHHG GGGGHQSYPY EAAYAGEHAM AAYYGSAAAY GAPGSGSSGG 240 SASRTPQGGS FEHQHPFASY K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 1e-56 | 30 | 120 | 7 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG467100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243257 | 0.0 | AC243257.1 Panicum virgatum clone PV_ABa103-H05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792076.1 | 1e-112 | nuclear transcription factor Y subunit B-like | ||||
TrEMBL | A0A2T7FBI6 | 1e-122 | A0A2T7FBI6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa01090.1.p | 1e-165 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 8e-59 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG467100.1.p |