PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG308200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 855aa    MW: 88678.2 Da    PI: 10.301
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG308200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-09206250244
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                          ++W++eEd  l+ +v+++G g+W+ I ++    ++Rt+ q+  rw
  Pavir.1NG308200.1.p 206 KAWSKEEDADLATGVQKYGEGNWDYILHKCKfdNTRTPDQLSQRW 250
                          58******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-11199255IPR009057Homeodomain-like
PROSITE profilePS512949.306200259IPR017930Myb domain
SuperFamilySSF466895.81E-12203256IPR009057Homeodomain-like
SMARTSM007171.3E-6204256IPR001005SANT/Myb domain
PfamPF002491.3E-7206250IPR001005SANT/Myb domain
CDDcd116603.57E-14211255No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 855 aa     Download sequence    Send to blast
MAAAAAPAAG TGKGKRKRAL SEDDVYLLLH RYAPGTILTA LQEVAQHAEG RRIDWRAVVR  60
KSATGITSAR EYQMLWRHFA YNHDLDETVG AGDQPLGDDS DLELELEPVP NPTKEALSEA  120
SALAKALISG SSREQASGQR VNLDAPVLNA PNEKTVRIPS EKQLAQNHRI TNVTGPVSNS  180
KQASHLGPSP GSLDPNGPSK KKKKPKAWSK EEDADLATGV QKYGEGNWDY ILHKCKFDNT  240
RTPDQLSQRW ALICKRPGGS TKPASTKHAT IASSEALSIA RQDALKALSI AVGPMRRSSM  300
LRPGAQQLGI QHKSAVFAPK IPKVRSAAAP SPALALPVPV PVPMPVKVPV KSPLPQEQQA  360
PVQRAPPKSA NASNKTRKKQ SPQPSPIIGP SSIQAAAIAA GGRIAPALAA ANFLKVAQSV  420
HIRSQVTASS KPCASTKAPS VVVEPGTETG STLHLEPLNT SAPKSGPSVL TTHATEQVHG  480
ASEVAVVNPA GPSAVAHPLE TNKALSTTPV PVSCDSEEKE GDSTFCVITI DDLFPEDAMQ  540
LETVDLEAKP EIAHQEAKQP ETVDPVDPKA KQPEAADPKA KQPETADPKA KQLETADPKA  600
KQLDTLNPKV EIVDPKDKDM LEFDQYVASQ GAVNTDHLDK SKTGRSSSQP QGLVGSQKKQ  660
AKLVPAVGKG NPVSAGVPTT VKRTKTSVPH LVNPVPAGSP RGIVGTVNAN APNKTLVRKA  720
TILVPAGVQA PLLKKHATNG KGTQVMQPNT GNGVPPASSQ ASVAVNGASK VNPPSSSGQA  780
SSVVNIGSRA NPPSSGQASA VVNIGSKANP PSSGQASVVV NGANRAANTP SSGKASAALS  840
GAANKANPPA APKQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.53720.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG308200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812020.10.0nascent polypeptide-associated complex subunit alpha, muscle-specific form-like
TrEMBLA0A3L6QE200.0A0A3L6QE20_PANMI; Nascent polypeptide-associated complex subunit alpha, muscle-specific form-like
STRINGPavir.Aa01714.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.12e-24MYB_related family protein