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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.1NG249600.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB_related |
Protein Properties |
Length: 309aa MW: 33409.3 Da PI: 5.4749 |
Description |
MYB_related family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.1NG249600.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 30.5 | 8.6e-10 | 150 | 193 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+WT +E+ ++ + + g+ Wk+ + + R++ q+ s++qky
Pavir.1NG249600.1.p 150 PWTLDEHSHFLAGLDNYKGN-WKAMSMEYLPSRSASQIASHYQKY 193
8*****************88.****755555*************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 309 aa
Download sequence Send
to blast |
MPHDEHAAAP PPPAAPEPEP EPEREPTWTR RDDKCLELLL VTTSIVPIHF ASDIIGKTPA 60 QMERRCRFMF AELRHVLEAQ DGETPPEWDM EVAAAAEAPA AEGEAPEPPA PSALPVAAEE 120 DSALPTAVGG GGGGTPEGRQ VRRRKSKAVP WTLDEHSHFL AGLDNYKGNW KAMSMEYLPS 180 RSASQIASHY QKYQNRKKQR KRDECKRASI HDITEPASAA VVAVAVAGGD AAAAWRKGDG 240 DLPRVVASAR GKEDEPREPQ VQSGEPTRGG DGPAGTGEEF PGPDDPGTLL TYRRAKRLYT 300 YIYGRMAI*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 141 | 146 | RRRKSK |
2 | 195 | 201 | RKKQRKR |