PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG217200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 384aa    MW: 42341.9 Da    PI: 7.7336
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG217200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.6e-08157220147
                          TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqky 47 
                          r+ WT+ ++e+lv+a  ++  +            W  I+ t +       +Rt+kq+k++w +y
  Pavir.1NG217200.1.p 157 RNEWTPADEEKLVNAWLMHSVDcvdgnsksgptFWGQISDTYNattdllRHRTAKQLKDHWSMY 220
                          789**********************************************************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR012173.3E-103854No hitNo description
PRINTSPR012173.3E-106173No hitNo description
PRINTSPR012173.3E-1091112No hitNo description
PRINTSPR012173.3E-10112128No hitNo description
PROSITE profilePS500906.411152221IPR017877Myb-like domain
SuperFamilySSF466894.13E-6154223IPR009057Homeodomain-like
SMARTSM007171.4E-4156223IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-6156219IPR009057Homeodomain-like
CDDcd001678.15E-4159220No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MQSYFDLLNA DPERSNTNTP GTNASEEEFD YSPLHRRSET APPSQPRALF PPAPGAFIGA  60
PPPYPYPPYP YPPYPYPPAP AASRVAPPPY PYPAPMTDAP PPYPYPPYPY PPYPYPPPPT  120
FTTSAPHGHA GGAASAGSEN EGGGTTAPCR PAIPKKRNEW TPADEEKLVN AWLMHSVDCV  180
DGNSKSGPTF WGQISDTYNA TTDLLRHRTA KQLKDHWSMY NARVSLFNAI YNQEVSKRQS  240
GADDDMVMDE AKARYARRAG HEFKLFHWWE AVRHQPKWSV KHGGGPNIDV SKRSRLGASG  300
EYISGSRETD EEVNRPPGRD RSKAAARKGK GKVGSSSHTS TDSVDMGEKL EDLCKITHEY  360
AQAKLWKQWN ILSSRSTDGM TDA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG217200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008670977.19e-79ribonuclease 3
TrEMBLA0A1D6E9H96e-77A0A1D6E9H9_MAIZE; Uncharacterized protein
TrEMBLA0A3L6FXG84e-77A0A3L6FXG8_MAIZE; Glutathione S-transferase T3
STRINGPavir.J22374.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3263337