PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG143300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 191aa MW: 22500.2 Da PI: 9.3817 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 67.9 | 2.6e-21 | 6 | 96 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fYn YA + GFs r ++ k++ ++e+t+r+fv s eg+r+e++ + t+++r++ra tr+gC+a++ v++++ +g w+vt+++ H+H++ Pavir.1NG143300.1.p 6 EFYNGYAFHKGFSGREDRVKYKPSTKEVTWRRFVYSFEGYRSEKHFErTDQKRQPRALTRCGCNARFDVQRSEsSGIWYVTDFVDVHSHPF 96 6******************************************998768999*******************999***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.7E-19 | 6 | 96 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MEDFFEFYNG YAFHKGFSGR EDRVKYKPST KEVTWRRFVY SFEGYRSEKH FERTDQKRQP 60 RALTRCGCNA RFDVQRSESS GIWYVTDFVD VHSHPFDKPE HAFVLRSHRG LNPYRSLEGG 120 GSRAGAWWAS SVPDHGCDGD QPRWSRRDWI SFAGSVKKIS RQKKVKIQGN DVEFMMNHMC 180 QMQEKDLEFF * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG143300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022680951.1 | 1e-62 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_022685196.1 | 7e-62 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2T8JE97 | 2e-62 | A0A2T8JE97_9POAL; Uncharacterized protein | ||||
TrEMBL | K3YNE3 | 9e-61 | K3YNE3_SETIT; Uncharacterized protein | ||||
STRING | Si015784m | 1e-61 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2449 | 9 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-14 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG143300.1.p |