PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1NG124800.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 338aa MW: 39748.8 Da PI: 8.3292

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1NG124800.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.6	2.1e-23	76	166	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 fYn+YA++ GFsvr++k ++ kr+g r+f Cs+eg+r+ + + ++ rr+ra t +C+akl++k+++ +g+w+v+k eHnH l Pavir.1NG124800.2.p 76 FYNKYARDKGFSVRRKKVRRAKRSGALLFRHFLCSREGQRDAKWLDkDVCGRRPRALTLWECQAKLEIKLDQaRGVWYVQKNLDEHNHRL 165 9*************************************99865546899*****************9*************99 PP FAR1 90 a 90 Pavir.1NG124800.2.p 166 D 166 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-21	76	166	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-8	288	322	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MYRSKVGDEE ELDFYLEPPD DNMSDRNPTS KEYGNASYDE EMFRTMSHAA ARHTTLDECW 60 DLVKKAFSSE MEAYIFYNKY ARDKGFSVRR KKVRRAKRSG ALLFRHFLCS REGQRDAKWL 120 DKDVCGRRPR ALTLWECQAK LEIKLDQARG VWYVQKNLDE HNHRLDTQDE VPFLWSHRKM 180 KDFQKTEIMA MEGVGIRKHV IMDVLQYRYG GYGEVGIIRK DAYNFSSRYK RSRIADGDAM 240 AVLGLMQSRQ KDDPDFYYDY QMDGDEHLKT MFWCDSQSHM DYQSFGDVVI FDSTYRMNRY 300 KMPFVPFVGM NHHRSTTVFG CGQWRSQGAS QAGADSR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1NG124800.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015696943.1	1e-108	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	B9FM97	1e-105	B9FM97_ORYSJ; Uncharacterized protein
STRING	OB10G13790.1	7e-97	(Oryza brachyantha)
STRING	Sb01g014270.1	4e-93	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-52	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.1NG124800.2.p