PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG068600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SBP
Protein Properties Length: 390aa    MW: 41198.2 Da    PI: 8.2242
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG068600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP46.59.8e-151641944878
                          SEEETTT--SS--S-STTTT-------S--- CS
                  SBP  48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                           fh+lsefD++krsCrrrL++hn+rrrk+q+
  Pavir.1NG068600.1.p 164 AFHALSEFDQKKRSCRRRLSDHNARRRKPQP 194
                          5***************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114112.47758192IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.107.3E-4162179IPR004333Transcription factor, SBP-box
PfamPF031101.6E-8163191IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.46E-12164197IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MEWTAPKPAA LPSSPPLLWD WGDRAAAGSG SSGDATARRG GKEREPKRTK GEEGGGAEVR  60
CQVEGCGLEL GHGQGTTTGS TASARPTPSA PASSSPARSA ALPAVQPVDA VLLSIAPGAL  120
CSALACSVCL RGAAILRLSA IALLPSLMIT SCEDGSRCYA AIIAFHALSE FDQKKRSCRR  180
RLSDHNARRR KPQPDAYAFA SARLPSSLFD DRRQISFVWN KAPLSHVRPF SSSWDSSSDF  240
KLAHAKEIRE LSTKVETTTG QVHFDKSRLS NAIPTLSHGK DELLPMKGPD TSTTASKFDG  300
ARDLQRALSL LSAGSCGFPS PVPQASCLIQ FTGASENSDD LHLSHGGNSG PASCADEQHI  360
APQPQLVRFT MDTSSNVYEP TFFGVNQIN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173190KKRSCRRRLSDHNARRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.74510.0callus| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems, leaf sheaths, and young panicles. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG068600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805124.11e-150squamosa promoter-binding-like protein 4
SwissprotQ653Z53e-66SPL11_ORYSJ; Squamosa promoter-binding-like protein 11
TrEMBLA0A2S3GM351e-149A0A2S3GM35_9POAL; Uncharacterized protein
TrEMBLA0A2T7F2J91e-149A0A2T7F2J9_9POAL; Uncharacterized protein
STRINGPavir.Aa03368.1.p1e-161(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62712952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.31e-15squamosa promoter binding protein-like 2