PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG054900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 299aa    MW: 31810.3 Da    PI: 4.657
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG054900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.81.3e-09127184259
                          XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                          +++k+  r+++N+ +A +sR+RKk +++ Le k+k Leae  +L   l+    e  +l
  Pavir.1NG054900.1.p 127 PDSKKKNRRMRNKDSAMKSRERKKLYVKDLEMKSKYLEAECCRLSYALQCCAAENMAL 184
                          689*************************************988887776666555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.3E-14124189No hitNo description
SMARTSM003381.8E-4126190IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.542128191IPR004827Basic-leucine zipper domain
PfamPF001706.0E-8129187IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.63E-10130188No hitNo description
CDDcd147041.74E-13131182No hitNo description
PROSITE patternPS000360134148IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0030968Biological Processendoplasmic reticulum unfolded protein response
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MAAAGVGGGG DYGLPIEEVD AVLASFCGDP AAVVAPLPAP EAEAGASREL LAAGEGLREG  60
LGEVEKFLME DYEGEAGVDG VDEFLDGVLV GDGEDDGSPK STVERSADSA SAREGEEVVG  120
ADGDDDPDSK KKNRRMRNKD SAMKSRERKK LYVKDLEMKS KYLEAECCRL SYALQCCAAE  180
NMALRQSLMK DRPVGAPTAM QESAVLTETL PLVSLLWLVS IVCLFLTPGV PNRSLVAPSI  240
LGRDLVKLAR TSTNGVKMFR MTTKGDDPRS LELVLLGRRC RSTRARIRSP LLPLVCGS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130136KKNRRMR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.298490.0callus| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in endoplasmic reticulum (ER) stress response (PubMed:21223397, PubMed:22050533, PubMed:22199238). Acts downstream of the ER stress sensors IRE1, BZIP39 and BZIP60 to activate BiP chaperone genes (PubMed:22050533, PubMed:22199238). {ECO:0000269|PubMed:21223397, ECO:0000269|PubMed:22050533, ECO:0000269|PubMed:22199238}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00019PBMTransfer from AT1G42990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG054900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By dithiothreitol-induced endoplasmic reticulum (ER) stress response (PubMed:22050533, PubMed:21223397). Induced by salt stress (PubMed:22050533). {ECO:0000269|PubMed:21223397, ECO:0000269|PubMed:22050533}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803229.11e-172bZIP transcription factor 50-like
SwissprotQ69XV02e-76BZP50_ORYSJ; bZIP transcription factor 50
TrEMBLA0A2S3GM811e-171A0A2S3GM81_9POAL; Uncharacterized protein
STRINGPavir.J35667.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69343750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G42990.14e-13basic region/leucine zipper motif 60
Publications ? help Back to Top
  1. Wakasa Y, et al.
    Expression of ER quality control-related genes in response to changes in BiP1 levels in developing rice endosperm.
    Plant J., 2011. 65(5): p. 675-89
    [PMID:21223397]
  2. Lu SJ, et al.
    Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses.
    Mol Plant, 2012. 5(2): p. 504-14
    [PMID:22199238]