PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG015000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 404aa    MW: 42669.4 Da    PI: 9.0565
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG015000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.38.5e-30320378259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           D y+WrKYGqK++kgs++pr+YYrC+s+ +Cp++k+ver+++d +++++tYe++Hnh 
  Pavir.1NG015000.1.p 320 ADNYSWRKYGQKHIKGSPHPRGYYRCSSKkDCPARKHVERCRSDASMLIVTYENDHNHA 378
                          69**************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.5E-13283317IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.4E-33307380IPR003657WRKY domain
PROSITE profilePS5081130.217314380IPR003657WRKY domain
SuperFamilySSF1182901.96E-26315380IPR003657WRKY domain
SMARTSM007748.9E-36319379IPR003657WRKY domain
PfamPF031067.8E-26321377IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MEVVEEANQA AVESCKKLVA FLSLSAGDGF RPMPVAAETD EVVARFSKVV AVLSDRLGHA  60
RARIGKSSPA IPVGVDASCF LDHPSLAPVH TPNGRHLVSS TPSPPSTAPT AATMRSVAPA  120
VLVSPCANVA PAPAAAKKFD TNMFLETPLL ELNSCGVLPS TAMAAAQKNT STVVTAPSPN  180
PCTTIAAHIQ FQPQQQQAKK QKSFQFDQTP RGEQFHIEVP VPLPRGGGGG GAAKEVVSFS  240
FDNNSVCTSS AATSFFTSIS SQLISMSDAT TSSAATAKKA CAKRGEDGSV KCHCPKKKKP  300
REKRVVRVPA ISDKNADIPA DNYSWRKYGQ KHIKGSPHPR GYYRCSSKKD CPARKHVERC  360
RSDASMLIVT YENDHNHAQP LDPSVLTATA AEAQEDPSPS SLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-203173801274WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG015000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432520.0AC243252.2 Panicum virgatum clone PV_ABa094-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796685.10.0protein WRKY1-like
TrEMBLA0A2T7BZR70.0A0A2T7BZR7_9POAL; Uncharacterized protein
STRINGPavir.J00250.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127053036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.14e-35WRKY DNA-binding protein 7