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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.1KG527200.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 406aa MW: 42294.5 Da PI: 7.2669 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.1KG527200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 52.5 | 1.1e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
+g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl
Pavir.1KG527200.1.p 14 KGPWSPEEDAKLKAYIEEHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
79*********************************************97 PP
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2 | Myb_DNA-binding | 38.7 | 2.4e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g +T+eE+ ++ + G++ W+ Ia+ ++ gRt++++k++w++
Pavir.1KG527200.1.p 69 GDFTEEEEHIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
789******************.*********.***********97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 406 aa
Download sequence Send
to blast |
MGRAPCCDKA SVKKGPWSPE EDAKLKAYIE EHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGD FTEEEEHIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGK 120 RAPSRRARAN QADPYLVVAA GGNMCSTSGG GGGNNGISAT AATPQALSAS ALERIQLHMR 180 LQGLYGAFGC ATNNDSAATA AAAPPWPKLE TLLQTNKLLQ GSLPTDAVAT TVVSVQQPQH 240 LADQSGLAAG AGEAEHQLSS ATGATYMAPP GSFERPKLGF YSPSAEAEAA SAEMTCPMVG 300 VYGGGGGGGF GPHHDELYDF LYSKYGSLGG GVVQGGHTYH IPLLPELQCP DAAAAAAAAV 360 GADEKFSTWA ASSCDYGAAA GGHQLQGNPI SSGLQDYVLG GGYDQ*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: In roots, expressed in endodermal cells from the late elongation zones to the differentiation zone and, to a lower extent, in endodermal cells of the meristematic zone. {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
Uniprot | TISSUE SPECIFICITY: Expressed in leaves, roots (endodermis-specific) and seedlings. {ECO:0000269|PubMed:16461581, ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322, ECO:0000269|PubMed:9839469}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |