PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG488700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YB
Protein Properties Length: 266aa    MW: 28058.1 Da    PI: 7.0331
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG488700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB171.11.3e-5331126297
                NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                          reqdr++Pianv+rim++vlP +akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa++ lGf+dyvepl+vyl++yr
  Pavir.1KG488700.1.p  31 REQDRLMPIANVIRIMRRVLPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSRLGFDDYVEPLSVYLHRYR 120
                          89**************************************************************************************** PP

                NF-YB  92 elegek 97 
                          e+ege 
  Pavir.1KG488700.1.p 121 EFEGEA 126
                          ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.7E-4924128IPR009072Histone-fold
SuperFamilySSF471139.67E-3833130IPR009072Histone-fold
PfamPF008083.2E-2537100IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006158.2E-176482No hitNo description
PROSITE patternPS0068506783IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006158.2E-1783101No hitNo description
PRINTSPR006158.2E-17102120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0033613Molecular Functionactivating transcription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDSASGFLPA GAANGSGSGG GGQQQAAAPI REQDRLMPIA NVIRIMRRVL PPHAKISDDA  60
KETIQECVSE YISFITGEAN ERCQREQRKT ITAEDVLWAM SRLGFDDYVE PLSVYLHRYR  120
EFEGEARGVV GLATPGAARG GDHHHPSMAL KSRAPGAMAQ HHHDMQMHAS MYRAPAVLPP  180
GAPHHGHGFV SMPHHGGGGH QYLPYPYEAA YAGEHAMAAY YGSAAAYGAP GNGGSGDGSG  240
SSGGSASRTP QGGSFEHQHP FASYK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A6e-6130121697NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG488700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432570.0AC243257.1 Panicum virgatum clone PV_ABa103-H05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792076.11e-127nuclear transcription factor Y subunit B-like
TrEMBLA0A2T7FBI61e-136A0A2T7FBI6_9POAL; Uncharacterized protein
STRINGPavir.Ab03027.1.p1e-123(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.21e-62nuclear factor Y, subunit B6