PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG446400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 269aa    MW: 27188 Da    PI: 5.0841
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG446400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.62.3e-1683131356
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                          y+G+r ++ +g+Wv+eIr+p+    + +r++lg++ tae+Aa+a++ a+++l+g+
  Pavir.1KG446400.1.p  83 YRGIR-CR-SGKWVSEIREPR----KaRRIWLGTYPTAEMAAAAYDVAARALRGA 131
                          9***9.55.6*********94....36*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.1E-2682144IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-1882139IPR016177DNA-binding domain
PROSITE profilePS5103220.17882138IPR001471AP2/ERF domain
CDDcd000182.16E-1783140No hitNo description
PfamPF008474.6E-983130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-2683138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MAEQQPPAAS STTPPTHHPP SPVVQVEAGH QASGSGPPAA PHSPSPAVQG DGAAAVGAAA  60
PGMATATSSG EPSPRSSGKH AFYRGIRCRS GKWVSEIREP RKARRIWLGT YPTAEMAAAA  120
YDVAARALRG ADAVLNFPAA IASRQAPASA SPADIRAAAA AAAAAAQLEH PPQGGEAAAT  180
ADPLAGAPDR HQHPGMGSAA ADAAGYAQEP GIGSDEFMDE EAIFEMPQLL RNMAAGMMMS  240
PPRLSPDTSD ESPDPSEAGE SLWSYHDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-13801381272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.42870.0leaf
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG446400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1693721e-131AC169372.2 Sorghum bicolor clone SB_BBc0156J18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826401.11e-121ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ905e-48ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A3L6QE051e-127A0A3L6QE05_PANMI; Uncharacterized protein
STRINGPavir.Ab02683.1.p1e-143(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-17ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]