PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG444600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Dof | ||||||||
Protein Properties | Length: 374aa MW: 37586.7 Da PI: 8.66 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125 | 2.3e-39 | 80 | 141 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Pavir.1KG444600.1.p 80 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 141 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-26 | 76 | 129 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.5E-33 | 82 | 138 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.059 | 84 | 138 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 86 | 122 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MDAAQWHQGL GLGKPMEEML MAGNTNPNQH PNPPPATPSA APGAQRPPGA PAAAAAAPGA 60 GAAAGAGAGA GTERRARPQK EKALNCPRCN STNTKFCYYN NYSLQQPRYF CKTCRRYWTE 120 GGSLRNVPVG GGSRKNKRSS SAMSSAAAAA ASTSAAVSGT IPVGFAAKNP KLMHEGAHDL 180 NLAFPHHNGR GLQPPEFAAF PSLESSSVCN PGATMAGNGG GAAGRGIGAL SAMELLRSTG 240 CYVPLQHVQL GMPAEYAAAG FALGDFRMPP PPQSQSLLGF SLDTHGTGAG GYSAGLQEGA 300 AGRLLFPFED LKPAVTAAGA ANNNGADQYE HSKDQAGDGS GASGVTGGHE TAGFWSNSIL 360 GNGSSNGGGG GPW* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.4143 | 1e-146 | leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in germinating seeds 3 to 5 days after imbibition. {ECO:0000269|PubMed:11470159}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG444600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC582410 | 0.0 | KC582410.1 Sorghum bicolor dof16 protein (dof16) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826520.1 | 0.0 | dof zinc finger protein 2-like isoform X1 | ||||
Swissprot | B9F1L8 | 1e-136 | DOF2_ORYSJ; Dof zinc finger protein 2 | ||||
TrEMBL | A0A2T8KX84 | 0.0 | A0A2T8KX84_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa00902.1.p | 1e-178 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2369 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 3e-36 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG444600.1.p |
Publications ? help Back to Top | |||
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