PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG429400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 321aa    MW: 32950.7 Da    PI: 6.9173
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG429400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-05526223
                         EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                         +C+ C+++F ++  L  H+r+H
  Pavir.1KG429400.1.p  5 TCKLCSRRFASPRALAGHMRSH 26
                         6********************9 PP
2zf-C2H211.60.00087248269223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          +Cp+C+++F +   L  H r+H
  Pavir.1KG429400.1.p 248 ECPHCNRVFASGQALGGHKRSH 269
                          5*****************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.681427IPR007087Zinc finger, C2H2
SMARTSM003550.0078426IPR015880Zinc finger, C2H2-like
PfamPF139126.1E-5627IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PfamPF139123.4E-8187211IPR007087Zinc finger, C2H2
SMARTSM00355170187207IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.29E-6187209No hitNo description
SuperFamilySSF576671.29E-6242269No hitNo description
PROSITE profilePS501579.411247269IPR007087Zinc finger, C2H2
PfamPF139121.4E-11247269IPR007087Zinc finger, C2H2
SMARTSM003550.24247269IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280249269IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MAKNTCKLCS RRFASPRALA GHMRSHSIAA AQAAAAAAAA AVKQQISSAS SASTSFAAAD  60
EDSGFKMPAS TYGLRENPKR SLRVADAAFS DRESEAESTP PHAKRVNAAA AVAWGEAEPV  120
SSLSEVATPE EDVALSLMML SRDSWPSAAL DDDDYSGYGS DDGYAPPAPL PPAPAPARAP  180
AEKRTQFPCV ACKKVFRSYQ ALGGHRASNV RGGRGGCCAP PVAPPPPPQP QPPASPFPEH  240
LDGEQPRECP HCNRVFASGQ ALGGHKRSHV CGAATAAATA AASAPPSPIN NPGMIDLNVA  300
PPSEEVELSA VSDPRFNPSA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG429400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797881.11e-148zinc finger protein ZAT1-like
TrEMBLA0A2T7FA041e-147A0A2T7FA04_9POAL; Uncharacterized protein
STRINGPavir.Ab02618.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-22C2H2-like zinc finger protein