PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG423200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HSF | ||||||||
Protein Properties | Length: 257aa MW: 27148.4 Da PI: 7.8888 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 103 | 2.6e-32 | 11 | 103 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 F+ k+y ++ed+ ++ +i w + +nsfvv d+ f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+h sF +g++ Pavir.1KG423200.1.p 11 FVWKTYMMVEDPGTDGVIGWGRGNNSFVVADPFVFSQTLLPAHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFAHASFLRGQT 91 9****************************************************************999.........************* PP XXXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkkse 103 + l++i r+ s+ Pavir.1KG423200.1.p 92 HPLRNIVRRGSS 103 ********9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 8.8E-49 | 7 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.63E-32 | 8 | 100 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 4.3E-36 | 8 | 100 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.3E-27 | 11 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.8E-17 | 11 | 34 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.8E-17 | 49 | 61 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 50 | 74 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.8E-17 | 62 | 74 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MAAGGGAAAP FVWKTYMMVE DPGTDGVIGW GRGNNSFVVA DPFVFSQTLL PAHFKHNNFS 60 SFVRQLNTYG FRKVDPDRWE FAHASFLRGQ THPLRNIVRR GSSAAGGGGG KRKDAGSAEP 120 SADDMAMVAT EVVRLKQEQR AIDDRVASMW RRVQETERRP KQMLAFLLKV VGDRDRLHRL 180 VGDAAAPDAP SGEAAAAAEG GEKRARLLLD GDGGIGSFGP DAVDFAGFYS GGGALGDVAV 240 DAPGGGSFAF GVDKGY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-24 | 3 | 105 | 12 | 125 | Heat shock factor protein 1 |
5d5u_B | 4e-24 | 1 | 100 | 14 | 129 | Heat shock factor protein 1 |
5d5v_B | 4e-24 | 1 | 100 | 14 | 129 | Heat shock factor protein 1 |
5d5v_D | 4e-24 | 1 | 100 | 14 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.4654 | 0.0 | callus| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG423200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU959741 | 0.0 | EU959741.1 Zea mays clone 219739 heat shock factor protein 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965592.1 | 1e-146 | heat stress transcription factor C-2b | ||||
Swissprot | Q0DBL6 | 1e-118 | HFC2B_ORYSJ; Heat stress transcription factor C-2b | ||||
TrEMBL | A0A368QVH6 | 1e-144 | A0A368QVH6_SETIT; Uncharacterized protein | ||||
STRING | GRMZM2G118047_P01 | 1e-132 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4471 | 34 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 8e-57 | heat shock transcription factor C1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG423200.1.p |